Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03]
32,731 sequences; 404,954,971 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq5228 113 8e-20
seq5117 113 8e-20
seq30011 84.2 4e-11
seq5684 84.2 4e-11
>seq5228
Length=576636
Score = 113 bits (124), Expect = 8e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
|| || || || || | || | |||||| ||||||||||| | ||||| |
Sbjct 536721 CGGAGGACAAGGTGAAGAGTTGACTCTTTCTGGATATTATAGTCAGCCAACGTACGGCCG 536662
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || ||||||||||| ||||| || ||||| |||||||| || || || || || ||
Sbjct 536661 TCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCCTCCTTG 536602
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| || | ||| ||| ||||| ||| ||| || || ||||| ||
Sbjct 536601 TCTTGGATCTTGGCCTTGACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATC 536542
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || ||||| ||||| || || || |||||
Sbjct 536541 GTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 536507
>seq5117
Length=577398
Score = 113 bits (124), Expect = 8e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| || | |||||| |||| || | || | ||||| |||||||||||
Sbjct 148861 ATACCACCCCTAAGTCGAAGGACCAAGTGGAGGGTTGATTCTTTCTGGATATTATAGTCA 148920
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | | ||| || | ||||| || ||||| || | ||||| ||||| ||
Sbjct 148921 GCAAGTGTGCGACCATCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 148980
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || || || || |||| ||||| ||| ||| || ||||| |||
Sbjct 148981 GGGATCCCTTCCTTGTCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCA 149040
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || ||||| || || || || || ||||| ||||| ||||||||
Sbjct 149041 ACCTCAAGGGTTATTGTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 149090
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| | | ||||| |||| ||| | || | ||| || || || |||||
Sbjct 148177 ATACCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCA 148236
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | | ||| || | |||||| |||||||| ||||| ||||||||||||||
Sbjct 148237 GCAAGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGT 148296
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || || || || || |||| || | ||| || || || || |||
Sbjct 148297 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCA 148356
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || | ||||||||| ||||| || || ||||| ||||| || |||||
Sbjct 148357 ACCTCCAAAGTTATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 148406
Score = 104 bits (114), Expect = 4e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| || | || | ||| || |||||| ||||||| | || || |
Sbjct 108192 CGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTCCTTCCA 108251
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || || || ||||| || | ||||| || ||||| || || ||||| ||
Sbjct 108252 TCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTG 108311
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || || | ||| | ||| ||||||||| ||| ||||||||||| || ||
Sbjct 108312 TCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATG 108371
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || ||||| ||||||||
Sbjct 108372 GTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 108406
Score = 96.9 bits (106), Expect = 6e-15
Identities = 163/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | | ||||| |||| || | |||| || || ||| ||
Sbjct 108399 ATTTGCATACCACCACGAAGGCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTG 108458
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| | | || | ||| |||| || ||||| ||||| || | |||||| |||
Sbjct 108459 TAGTCAGCAAGGGTACGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGA 108518
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|||||||| || || || || || || || || | || | ||| || || || ||
Sbjct 108519 TCAGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAG 108578
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || | ||||||||||||||| || || ||||| ||||| || |||||
Sbjct 108579 CTTTCAACCTCCAAAGTTATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 108634
Score = 93.3 bits (102), Expect = 8e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | |||||| || ||||| || |||||||| ||||| ||||| || || || ||
Sbjct 111863 ATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTT 111922
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
|| || || || | || | ||| || || || || ||||| || | ||||||
Sbjct 111923 GTCCTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTAT 111982
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||||||| || || ||||| ||||| || |||||
Sbjct 111983 AGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 112018
>seq30011
Length=125740
Score = 84.2 bits (92), Expect = 4e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||||||||| || || | | ||| || || ||||| |||||||| || ||||| ||
Sbjct 33155 TGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATC 33096
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | || || || ||||| ||| ||||| ||||| || || || ||
Sbjct 33095 TTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCG 33036
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| ||||| || || || ||||| ||
Sbjct 33035 GTTAGGGTTTTCACGAAGATCTGCATCTT 33007
>seq5684
Length=29006
Score = 84.2 bits (92), Expect = 4e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||||||||| || || | | ||| || || ||||| |||||||| || ||||| ||
Sbjct 5026 TGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATC 4967
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | || || || ||||| ||| ||||| ||||| || || || ||
Sbjct 4966 TTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCG 4907
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| ||||| || || || ||||| ||
Sbjct 4906 GTTAGGGTTTTCACGAAGATCTGCATCTT 4878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899286317647920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |