Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5228 114 2e-20 seq5117 113 8e-20 seq3895 84.2 4e-11 >seq5228 Length=576636 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| |||||||| || | || | || |||| ||||||||||| || Sbjct 536704 AGTTGACTCTTTCTGGATATTATAGTCAGCCAACGTACGGCCGTCTTCCAATTGTTTTCC 536645 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 |||||| || ||||| ||||| || ||||| || || || || ||||| || || || Sbjct 536644 AGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCCTCCTTGTCTTGGATCTTGGCCTT 536585 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| || |||||||| || || || ||||| || || || ||||||| || Sbjct 536584 GACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTTAGGGT 536525 Query 172052 TTTAATGAATATCTGCAT 172069 ||| | ||| |||||||| Sbjct 536524 TTTGACGAAGATCTGCAT 536507 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | || | ||| || ||| |||||||| | Sbjct 488286 ACCACCACGAAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGC 488227 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || || | || || |||||||| || | ||||| || || ||||| Sbjct 488226 TAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGG 488167 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || || || || || || |||||| ||||||||||| || || Sbjct 488166 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCAC 488107 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || ||||| || || || | ||||||||||| Sbjct 488106 CTCCAGAGTAATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 488059 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || | ||| | || | ||| || || |||||||| Sbjct 488060 ATACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCC 488001 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | ||||| || || || || || | ||| || || ||| Sbjct 488000 GCAAGAGTCCTTCCATCCTCAAGCTGTTTGCCTGCGAAGATCAAACGCTGCTGATCCGGT 487941 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||| |||||||| ||||| || ||||| || || ||||| || Sbjct 487940 GGATTTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA 487881 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| ||||| ||||| | || |||| ||||||||||| Sbjct 487880 ACTTCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 487831 >seq5117 Length=577398 Score = 113 bits (124), Expect = 8e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | || || | || | ||||||||||| ||| || ||||| || || Sbjct 107492 AAAACCACCACGCAGGCGAAGGACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTC 107551 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | |||| || | || |||| || || ||||||||||| || ||||| || || || Sbjct 107552 AGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCTGG 107611 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| || || || |||||| || |||||| || || ||||| || Sbjct 107612 AGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTATCAATGGTGTCTGAACTCTC 107671 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || |||||||| || || ||||| || | ||| ||||||||| Sbjct 107672 AACCTCCAGGGTGATGGTTTTTCCCGTCAATGTCTTCACGAAAATCTGCATT 107723 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| || | || || || | ||| | ||| || |||||| || || Sbjct 108177 ATACCTCCACGAAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCG 108236 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || ||| || || | || ||||||||||| || | ||||| |||||||| Sbjct 108237 GC-AAGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGG 108295 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| || ||||| || ||| ||| ||||| |||||||| || || Sbjct 108296 CGGGATGCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTC 108355 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||| || ||||| | || |||| || || ||||| Sbjct 108356 AACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 108406 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | || | ||| || ||| ||||||||| Sbjct 107949 ATGCCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCT 108008 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || | | || || | || || ||||||||||| || ||||| ||||| || Sbjct 108009 GC-AAGGGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGG 108067 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || |||||||| || || || |||||| ||| || ||||| ||| Sbjct 108068 AGGAATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTC 108127 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || ||||| || || || | || |||||||| Sbjct 108128 CACCTCCAAAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 108178 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | ||| ||||| | || | || || || || || ||| Sbjct 108633 ATACCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCT 108692 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| ||||||||||| | || || ||||| ||| Sbjct 108693 GAAAGTGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGT 108752 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || || ||| ||||| ||||| || || ||| Sbjct 108753 GGGATTCCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCC 108812 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| ||||| | || || | || |||||||| Sbjct 108813 ACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 108862 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | ||| | ||||| || ||||| ||| Sbjct 111561 ATACCACCACGGAGGCGAAGAACCAAGTGGAGAGTGGATTCTTTCTGGATGTTATAGTCT 111620 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | || || ||||||||||| | | ||| || || ||| Sbjct 111621 GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCGCTGCTGATCTGGT 111680 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| ||||| ||| ||||| || || || || |||| Sbjct 111681 GGGATACCCTCCTTGTCTTGAATTTTGGCTTTCACATTGTCAATGGTGTCAGAGCTTTCT 111740 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| || || | ||||| | ||||||||||| Sbjct 111741 ACCTCAAGAGTGATTGTTTTTCCTGTCAGGGTTTTCACAAATATCTGCAT 111790 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | ||| | ||||| || ||||| ||| Sbjct 147949 ATACCACCACGGAGGCGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCT 148008 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | || || ||||||||||| | ||||| || || ||| Sbjct 148009 GCAAGAGTCCTTCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGT 148068 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| ||||| ||| || || || || || || ||| Sbjct 148069 GGGATACCCTCCTTGTCTTGAATTTTTGCTTTCACGTTGTCGATGGTGTCAGAACTTTCA 148128 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| ||||| ||||| | ||||| | || |||||||| Sbjct 148129 ACCTCAAGAGTAATTGTTTTTCCAGTGAGGGTTTTCACAAAGATCTGCAT 148178 Score = 84.2 bits (92), Expect = 4e-11 Identities = 167/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| ||||| || | || || || | || | ||| || || |||||||| Sbjct 112245 ATGCCACCCCTAAGACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCG 112304 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | |||||||||||||| || | ||||| || || ||| Sbjct 112305 GCGAGTGTGCGCCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGT 112364 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||| |||||| || ||||| || ||| Sbjct 112365 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCA 112424 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT--AT 172077 || || || || |||||||| || || | || || | || || |||| | |||| || Sbjct 112425 ACCTCAAGGGTTATGGTTTTTCCGGTGAGAGTCTTCACAAAGATTTGCA-TCTATTGGAT 112483 Query 172078 AAAAA 172082 ||||| Sbjct 112484 AAAAA 112488 >seq3895 Length=609050 Score = 84.2 bits (92), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 39236 || |||||||| |||||||| || | |||||| ||||||||||| | |||||| | Sbjct 437943 AATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCT 437884 Query 39237 GAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCT 39277 || ||||| || |||||||| || ||||| || |||| ||| Sbjct 437883 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCT 437843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904765674919800