Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8009 132 1e-25 seq148 132 1e-25 seq24454 122 3e-22 seq25319 120 9e-22 seq19232 120 9e-22 seq22345 116 1e-20 seq28498 98.7 3e-15 seq20009 93.3 1e-13 seq27564 89.7 2e-12 seq30902 84.2 6e-11 >seq8009 Length=546753 Score = 132 bits (146), Expect = 1e-25 Identities = 286/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| ||| |||| || ||||| || || || ||||||||||| Sbjct 252042 CTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCC 252101 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 |||| ||| | | | ||| || | || ||||| ||||||||||| || | || Sbjct 252102 TCCTCC--AATTCC---AGTTCCTCTTTGTCTT-CCAACGGCATCAATTTCATCCACAAA 252155 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCT 289113 | | || |||| ||| | | | || | || ||| | |||| || | ||||| Sbjct 252156 TACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA--TCTCGGACTCTAGATGCA 252213 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 || | ||||||| |||| || ||||| |||||| | |||| | || | |||| ||| Sbjct 252214 CCGACACCAACAAACATCTCAACAAACTCAGAACCTGATA-TGGAGAAAAATGGAACACC 252272 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || || | |||| | || ||||| ||||| || ||||| || || || | | Sbjct 252273 GGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAG 252332 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| |||||||| | || ||| ||| || || ||||||| |||| | || Sbjct 252333 AAGAACACCCTTTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAA 252392 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || | |||| | || | ||||||||||||| ||| || |||||| |||| || Sbjct 252393 CTCCACCACTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATCATCAAATGT 252452 >seq148 Length=65018 Score = 132 bits (146), Expect = 1e-25 Identities = 286/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Plus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| ||| |||| || ||||| || || || ||||||||||| Sbjct 25887 CTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCC 25946 Query 288996 ACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAA 289055 |||| ||| | | | ||| || | || ||||| ||||||||||| || | || Sbjct 25947 TCCTCC--AATTCC---AGTTCCTCTTTGTCTT-CCAACGGCATCAATTTCATCCACAAA 26000 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCT 289113 | | || |||| ||| | | | || | || ||| | |||| || | ||||| Sbjct 26001 TACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA--TCTCGGACTCTAGATGCA 26058 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATT 289172 || | ||||||| |||| || ||||| |||||| | |||| | || | |||| ||| Sbjct 26059 CCGACACCAACAAACATCTCAACAAACTCAGAACCTGATA-TGGAGAAAAATGGAACACC 26117 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 ||||| || || | |||| | || ||||| ||||| || ||||| || || || | | Sbjct 26118 GGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAG 26177 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| |||||||| | || ||| ||| || || ||||||| |||| | || Sbjct 26178 AAGAACACCCTTTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAA 26237 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || | |||| | || | ||||||||||||| ||| || |||||| |||| || Sbjct 26238 CTCCACCACTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATCATCAAATGT 26297 >seq24454 Length=1077519 Score = 122 bits (134), Expect = 3e-22 Identities = 223/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC- 289088 || || ||||| ||||| ||||| || | || || || ||||| | || | ||| Sbjct 923928 CCCACTGCATCTATTTCATCAATAAACACCAAGCATGGCGAATTC-GCCTTGGCCTTGTT 923986 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || |||||||| | || ||||| | ||||||| |||| || | || || || | Sbjct 923987 AAACAAATCTCTTACTCTTGAAGCTCCTACACCAACAAACATCTCAATGAACTCCGATCC 924046 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | || || | || |||||| || |||| ||| | |||| || ||||| Sbjct 924047 TGACAGAGAAAAAAAGGGAACCCCTGCTTCTCCAGCTATGGCCTTAGCCAACAGCGTCTT 924106 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||| || ||||| || ||||||||||||| ||||| | |||||| ||| | | Sbjct 924107 TCCTGTCCCTGGTGGCCCAACTAATAGAACTCCTTTTGGAATTTTTGCACCAACTGCGGC 924166 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 ||||||| || ||| | |||| ||||| || | || || | |||||| ||||| Sbjct 924167 GAATTTCTCTGGTGTCTGAAGGAATTGCACAATCTCTTGAAAATCTTGTTTTGCTTCATC 924226 Query 289329 ACATCCTGCTACATCAGCAAAAGT 289352 | ||| || |||||| |||| || Sbjct 924227 AACTCCAGCAACATCATCAAATGT 924250 >seq25319 Length=6653 Score = 120 bits (132), Expect = 9e-22 Identities = 282/416 (68%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| || || || |||||||| ||| || Sbjct 5361 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 5302 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || || | || || ||| | | | | || |||||||||||||| ||||| || | Sbjct 5301 TCC--AAGC--CCTGCTC-CTC-TCTGTCTCCCCACAGCATCAATTTCATCAATAAACAC 5248 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | |||||| | || | | || | |||| || || || || | |||||| |||| Sbjct 5247 AATACACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAAC 5188 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 ||||||| ||| || ||||| || || || | || ||| | |||| || |||| Sbjct 5187 ACCAACAAACAACTCAACAAACTCTGAGGCAGC-ACATGAGAAAAATGGCACGCCGGCTT 5129 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||||||| |||| | || || || ||||| ||||| || |||||| || Sbjct 5128 CTCCAGCAACTGCCCTAGCCAATAAAGTTTTCCCAGTTCCTGGTGGCCCAACTAATA-AA 5070 Query 289238 CTCCCTTTGGTACTTTT-GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | |||||| | | | || || || || | || || || ||| | |||| ||| || Sbjct 5069 CACCCTTTTGGAATCTTAGCGCCCAAAGCTGTGTACTTATCGGGGTTTTTTAGAAAATCA 5010 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | || | | ||| ||||||| | |||| || || ||||||||||| || Sbjct 5009 ACTACCTCTTGTAATTCCAATTTTGCTTGATCAGCACCAGCCACATCAGCAAATGT 4954 >seq19232 Length=403008 Score = 120 bits (132), Expect = 9e-22 Identities = 282/416 (68%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || |||| ||||||| || || || |||||||| ||| || Sbjct 366712 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCTCC 366653 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || || | || || ||| | | | | || |||||||||||||| ||||| || | Sbjct 366652 TCC--AAGC--CCTGCTC-CTC-TCTGTCTCCCCACAGCATCAATTTCATCAATAAACAC 366599 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | |||||| | || | | || | |||| || || || || | |||||| |||| Sbjct 366598 AATACACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAAC 366539 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTT 289177 ||||||| ||| || ||||| || || || | || ||| | |||| || |||| Sbjct 366538 ACCAACAAACAACTCAACAAACTCTGAGGCAGC-ACATGAGAAAAATGGCACGCCGGCTT 366480 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||||||| |||| | || || || ||||| ||||| || |||||| || Sbjct 366479 CTCCAGCAACTGCCCTAGCCAATAAAGTTTTCCCAGTTCCTGGTGGCCCAACTAATA-AA 366421 Query 289238 CTCCCTTTGGTACTTTT-GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | |||||| | | | || || || || | || || || ||| | |||| ||| || Sbjct 366420 CACCCTTTTGGAATCTTAGCGCCCAAAGCTGTGTACTTATCGGGGTTTTTTAGAAAATCA 366361 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | || | | ||| ||||||| | |||| || || ||||||||||| || Sbjct 366360 ACTACCTCTTGTAATTCCAATTTTGCTTGATCAGCACCAGCCACATCAGCAAATGT 366305 >seq22345 Length=372611 Score = 116 bits (128), Expect = 1e-20 Identities = 215/313 (69%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || |||||||| ||| | || || | || || || || || ||| || || Sbjct 238742 CATTATATCTTCCATTGCCTTCACTAGCCGCCTTTGGATGTATCCGGTCTCAGAAGTCTT 238683 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| ||||| | | |||||||||||||||||| || | ||| | || Sbjct 238682 CACTGCAGTATCAATAAGACCTTCCCTACCACCCATAGCATGGAAAAAGAACTCCTGTGG 238623 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||||| | | | ||| |||| || || || || || ||| || || Sbjct 238622 GGTCAGCCCACGCAGGTACGAGTTCTCCACAAACCCTCGACTTTCTGGCCCATAATCATC 238563 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGATACGCTTTCCATCAA 302803 || ||||| || |||| |||| | ||| || | || |||||||||||||||| || | Sbjct 238562 TTTAGTAAAATGAGGCAATGTCC-GATCTACAAACCCAAATGGGATACGCTTTCCTTCCA 238504 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | |||||||| |||| || | | ||||||| || ||||| | ||| || ||||| | Sbjct 238503 CATTCTGCTGCCCCACACAAGCAGTCATCTGTGATATATTGATGAAACTTCCTTTGGATC 238444 Query 302864 CAGCATTTACCAT 302876 |||| | ||||| Sbjct 238443 CAGCTGTCACCAT 238431 >seq28498 Length=175162 Score = 98.7 bits (108), Expect = 3e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 156044 AAAACTACCATTCCTCTTGCCAC---CCTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| |||| || |||||||||| ||||||| ||||| || ||||| | ||| || || Sbjct 163098 AAAAATACCCTTTCTCTTGCCACCACCCTGATCCACATAACGGGCAGTATCATTAAACAC 163157 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 | ||||| || | ||| |||||||| || || || ||||| ||||||| |||| Sbjct 163158 CCGCAGCATTGGGACAATGCCATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGT 163217 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 || |||| || |||| | |||||||| || | |||| || ||| || Sbjct 163218 TGCACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAACAGCACA 163277 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | ||| | | || ||||||||| |||||||| ||| Sbjct 163278 CTCCTTCAAAGTTTCATAGATTCCTTCAATACTATCATCTTTCAT 163322 >seq20009 Length=1110698 Score = 93.3 bits (102), Expect = 1e-13 Identities = 305/467 (65%), Gaps = 13/467 (3%) Strand=Plus/Minus Query 288882 GTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTT--A 288939 |||||| ||||| | ||||||||| | || | |||||||| |||| | || | Sbjct 326926 GTCTAAAATATCTGGTCTGTTTGTACCAGCAAGTACAACAACTCCAGCGGT--GGTTCCA 326869 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 ||||||||||| | | | |||||||| || ||| | |||||||| ||| Sbjct 326868 AATCCATCCATCTCTACAAGCAACTGATTAAGAGTACTTTCACGCTCATCATTGCCACCA 326809 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 ||| || | | |||| | ||||| ||||| || || |||||||| | Sbjct 326808 ---GAAAAGCCTCCACGACCCCTTGCTCGACCAATTGCATCTATCTCATCAATGAATACA 326752 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | || || | | ||||| || | ||| || | ||| | |||| |||| Sbjct 326751 ATACTAGGTGCACACTGTCTTGCTTCTTGAAACAAGCTCCGTACTCTAGATGGCCCAACT 326692 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGA--TACTTGAATGAATGTTACATTTGCTT 289177 |||||| ||||||| | ||| || || | || |||| | ||| | ||| || || Sbjct 326691 CCAACAAACATTTCCATAAAATCTGACCCAGACATACTG--AGGAAAGGCACACCTGATT 326634 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || |||| | || ||||||||||| ||||| ||||| || || | | || Sbjct 326633 CACCAGCAGTTGCCTTTGCAAGAAGTGTCTTCCCTGTGCCAGGGGGGCCTACAAGAAGTG 326574 Query 289238 CTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 | || ||||| | ||| || |||||| || ||| || | ||| |||| | || | | Sbjct 326573 CACCTTTTGGAATTTTCGCTCCCAGCTC-CTCATACTTTTTTGGGTTCTTCAGGAAGTGT 326515 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||| || ||| | || ||||||||||| || |||||||| Sbjct 326514 ACAAACTCCATAATTTCTTGCTTAGCCTCATCACAGCCAGCTACATC 326468 >seq27564 Length=213285 Score = 89.7 bits (98), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 156046 AACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || |||| |||||||| ||| || ||||| ||||| || ||||| | ||| || || | Sbjct 93922 AATTACCCTTCCTCTTGCCGCCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCC 93981 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || | ||| ||||| || || ||||| ||||| ||||||| || | || Sbjct 93982 GCAGCATTGGCACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTG 94041 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 |||| || |||| | |||||||| || | |||| || ||| || | Sbjct 94042 CACGAATGTTGTGAACTGAGACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACT 94101 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 |||| | ||||| | || ||||||||| |||||||| ||| Sbjct 94102 CCTTCAAAGTATCATATATTCCTTCAATACTATCATCTTTCAT 94144 >seq30902 Length=94725 Score = 84.2 bits (92), Expect = 6e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || | |||||||||||| | ||||||||| || || ||||| |||||||| ||| Sbjct 63049 GCACCATGAGCAATCATACAATCTCTCTCCATTTCTCCAAATCGAAGGCCACCATCCCGA 63108 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 | | ||||| |||||||| | || ||| | | |||||| | || ||| Sbjct 63109 GATCGTCCCTCAGCAGGCTGCCTTGTAAGAATCTGTACAGGACCCCTACCACGAGAATGG 63168 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||||||| ||||| ||||| || | ||||| ||| ||| || | ||| || Sbjct 63169 ATTTTATCATCAACCATGTGCTTCAGTCTTTGGTAATATGTGGGGCCAAGGAATAT 63224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471200369832347