Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5228 91.5 1e-13 seq31290 84.2 2e-11 seq5117 84.2 2e-11 >seq5228 Length=576636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| | || |||||||| ||||| ||||| ||| | Sbjct 487147 ATGCAAATCTTCGTGAAAACCCTGACTGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 487206 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| ||||| || || | ||| |||||| Sbjct 487207 GACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGAATCCCCCCGGATCAG 487266 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || ||||| ||||| | | | || |||| ||||||||| Sbjct 487267 CAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACAAC 487326 Query 110453 ATTCAAAAAGAATCTACG 110470 || || || || || ||| Sbjct 487327 ATACAGAAGGAGTCAACG 487344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGCCTG 110330 ||||| || ||||| ||||| || ||||||||||| ||||| ||||| || |||| | Sbjct 486919 ATGCAGATCTTTGTGAAAACCTTGACCGGCAAAACTATTACTCTCGAAGTCGAGAGCTCG 486978 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || || ||| | | ||||| ||||| ||||| || || | || ||| | Sbjct 486979 --GACACCATCGACAACGTAAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCGGACC 487036 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || ||||| | ||| || || ||||| ||||| | | | || |||| ||||||| Sbjct 487037 AGCAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACA 487096 Query 110451 ACATTCAAAAAGAATCTAC 110469 |||| || || || || || Sbjct 487097 ACATCCAGAAGGAGTCAAC 487115 >seq31290 Length=752448 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| |||||| | || |||||| || ||||| || | ||| |||||||| |||| Sbjct 237636 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATATTTGCTGGTAAACAATTGGAA 237577 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| |||||| | || ||||| ||||||||||| || || || | ||| |||| Sbjct 237576 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACACTTCACTTGGT 237521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||| | ||||| || || || ||| | || |||| | Sbjct 673832 ATGCAGATCTTCGTCAAGACTCTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCC 673891 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| |||||||| || | ||| ||| || Sbjct 673892 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAAGAGGGGATCCCCCCGGACCAG 673951 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || || ||||||||||| | | | || |||| ||||| ||| Sbjct 673952 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCCGATTATAAC 674011 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || ||||| ||| | ||| | ||||| | ||| | || |||| Sbjct 674012 ATCCAGAAGGAATCCACGCTCCACCTTGTGTTGCGCCTGAGGGGAGGAA 674060 >seq5117 Length=577398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | ||||| |||||||| ||| | || || | Sbjct 112474 ATGCAAATCTTTGTGAAGACTCTCACCGGAAAAACCATAACCCTTGAGGTTGAAAGCTCC 112415 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| ||||| ||||| ||||| | || ||||| Sbjct 112414 GATACCATTGATAATGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCAG 112355 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| ||||||||||| ||||||| | ||| | || ||||| ||| Sbjct 112354 CAGAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGGCGCACACTCGCCGATTATAAC 112295 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || || || || ||||| |||| Sbjct 112294 ATCCAGAAGGAGTCGACCCTGCACTTGGT 112266 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 || || || ||| | |||| ||| || || ||||| || |||| || || | || ||| Sbjct 107836 GACCAGCAGAGATTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGAT 107777 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||| || ||||| || |||| ||||||| |||||||| || |||| Sbjct 107776 TACAACATTCAGAAGGAATCCACACTGCATTTGGTGTTGAGACTGCGTGGAGGAA 107722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412676913744383