Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3895 172 9e-37 seq26974 161 2e-33 seq19565 104 4e-16 >seq3895 Length=609050 Score = 172 bits (190), Expect = 9e-37 Identities = 209/285 (73%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | |||||||| ||||||||||| ||||| || ||||| || ||||| || Sbjct 437934 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCTGAGAAGAAA 437875 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| ||| ||||| ||| | | ||| || ||||| ||| ||| || Sbjct 437874 ATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTC---- 437819 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| || | ||||||| || || || || |||| ||||| ||||||||| Sbjct 437818 --GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCG 437761 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||||| ||| ||| ||| | | ||| |||| ||| || || | || |||||||| Sbjct 437760 TGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTAC 437701 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 437700 ATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 437656 Score = 158 bits (174), Expect = 2e-32 Identities = 199/268 (74%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||||||| ||||||| | ||||| |||||||| ||||||||| Sbjct 437649 GCCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCG 437590 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||| ||||| |||||||| |||||||||| ||||| |||||| || | || Sbjct 437589 TCGGAGGCTGCGAAGAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGG 437530 Query 796270 GAGACCCAGTGGACCGTG-TC-GGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||||||| | | | || ||| || || || ||||| ||||||||||| || | Sbjct 437529 GCCTCCCAGTGG-CGGAGATCTTGCG-AAAGATCAACTTCCTCAGCGGTCCAAAACGACG 437472 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 | ||||| || |||||||| ||||| || || |||| | || ||||||| ||| | Sbjct 437471 CTTCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATC 437412 Query 796388 GATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||| ||| || | |||||||||||| Sbjct 437411 GATCGGGATTTGGGGCTAGCAGCGGCTC 437384 Score = 91.5 bits (100), Expect = 2e-12 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 || || || || ||||| || | ||||||||||| ||||||||| || || || ||| Sbjct 438261 TCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGCTCCATCCAATCAAAAGGATTCGCC 438202 Query 793986 GTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 ||| ||||| || |||| |||| || ||| || | || ||||| || || || Sbjct 438201 ACACTGTACAGCTTCCCGTACCCAAGCGCACCCAA-CAATCTATCTGCGACAAACTCTAT 438143 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGCGACTCGCTGA 794103 |||||| | ||| | | | ||||| || | | ||| ||| ||||||| |||| | Sbjct 438142 GTACTGACTCATCAATTCTCCATTCATCCCCACCAACGCGCAC-GGCAGCGCATCGCACA 438084 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTC 794131 |||||||| |||| ||||| || ||||| Sbjct 438083 CAAACTCTCTCTCTATCTCCACCGCCTC 438056 >seq26974 Length=240166 Score = 161 bits (178), Expect = 2e-33 Identities = 200/269 (74%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| |||||||| || |||||||| | | |||| ||||| || ||||| ||| Sbjct 148832 GCCTCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCG 148773 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| |||||||| |||||| |||| ||||| ||||||| | | || Sbjct 148772 TCCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGG 148713 Query 796270 GAGACCCAGTGGACCGTGTCG-GCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 || |||| ||| |||| ||| | |||||||||||||| || |||||||| || || Sbjct 148712 GATTCCCACTGGCGGATGTCCTGCGAC-AGGTCGACCTCCTCCGCCGTCCAAAATGAAGC 148654 Query 796329 CTCGGCCTTTTTGTACATCTCCCATAT--CCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 ||||| || |||||||| ||||| || ||| |||| |||| || |||| || Sbjct 148653 TTCGGCTTTCTTGTACATTTCCCAGATTTCCG--GGTACTGGATCGGAAACATGCAGAAT 148596 Query 796387 CGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||| |||||| | |||||||||||| Sbjct 148595 CGATCTGGGTTCGGGGTTAGCAGCGGCTC 148567 Score = 156 bits (172), Expect = 7e-32 Identities = 207/288 (72%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || ||||| | |||||||| || | |||||| || || ||||||||||||||||| Sbjct 149120 AGTCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 149061 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || ||||| || ||| ||||| | | || | ||| || || || ||| ||| || Sbjct 149060 AATATGCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGCCGTC- 149002 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 |||||| || | ||||| || |||||||| || | |||||||| || | | Sbjct 149001 -----GATCCAATTTAGGGCCCAGTCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAG 148947 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 |||||||| | | || ||| ||| | | | || | ||| || || | ||||||||| Sbjct 148946 GCGCGAAATAAGCGGCTCTTTTCGTCGGAATTTTTTATGTACGTTTCTAGAAGGAGCGAG 148887 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 || | || ||||||||||| ||||||||||| |||||||| || ||| Sbjct 148886 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAG 148839 >seq19565 Length=400688 Score = 104 bits (114), Expect = 4e-16 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| || ||||||||| |||||| ||| ||| ||| Sbjct 157009 TGAACTTGGTAACGGCCTTGGTCCCCTCCGACACGGCGTGCTTGGCCAATTCACCGGGCA 157068 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||||||||||||||| || | | |||||| |||||| | Sbjct 157069 AGACCAATCTCACGGCGGTCTGGATTTCCCTCGACGTGATCGTCGGCTTCTTGTTGTACC 157128 Query 1485590 GCGCCAGGCGGCCGGCCTC-GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || || ||||| | ||| || |||| || ||||| | || |||| Sbjct 157129 TAGCGAGACGAGACGCCTCTTGGGCCAAT-TTCTCGAAGATATCGTTAATGAAACTGTTC 157187 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| ||||||| || | ||||| || |||||||| || |||||| Sbjct 157188 ATGATGCCCATGGCCTTGCTGGAGATACCGATATCGGGATGAACCTGCTTCAGGACCTTG 157247 Query 1485709 TAAA 1485712 ||| Sbjct 157248 AAAA 157251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912764654243909