Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5228 100 2e-16 seq31290 86.0 5e-12 seq30011 86.0 5e-12 seq5684 86.0 5e-12 seq5117 84.2 2e-11 >seq5228 Length=576636 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || ||||| | || |||||||| ||||| ||||| ||| ||| Sbjct 487147 ATGCAAATCTTCGTGAAAACCCTGACTGGCAAAACTATTACTCTCGAAGTCGAGAGCTC- 487205 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| || || || || | ||| |||||| Sbjct 487206 CGACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGAATCCCCCCGGATCA 487265 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || || ||||| ||||||| | || |||| || ||||| Sbjct 487266 GCAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACAA 487325 Query 107735 CATTCAAAAGGAGTCTACG 107753 ||| || |||||||| ||| Sbjct 487326 CATACAGAAGGAGTCAACG 487344 >seq31290 Length=752448 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || || |||||| | || ||||||||||||||| || | ||| |||||||| |||| Sbjct 237636 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATATTTGCTGGTAAACAATTGGAA 237577 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | || ||| | || || || ||||||||||||||||| || | ||| |||| || Sbjct 237576 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACACTTCACTTGGTCCTG 237517 Query 107769 AG 107770 || Sbjct 237516 AG 237515 >seq30011 Length=125740 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || || || || || || |||||| | || |||| | Sbjct 33922 ATGCAGATTTTTGTCAAGACATTGACCGGGAAGACGATTACCCTGGAGGTGGAGAGTTCG 33981 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || ||||| | || |||||| Sbjct 33982 GATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAG 34041 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || |||||||| ||||||| | || | || || |||||| Sbjct 34042 CAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGACGGCCGTACTCTTGCTGATTACAAC 34101 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 34102 ATTCAGAAGGAGTCCAC 34118 >seq5684 Length=29006 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || || || || || || |||||| | || |||| | Sbjct 6249 ATGCAGATTTTTGTCAAGACATTGACCGGGAAGACGATTACCCTGGAGGTGGAGAGTTCG 6308 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || ||||| | || |||||| Sbjct 6309 GATACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCACCTGATCAG 6368 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || |||||||| ||||||| | || | || || |||||| Sbjct 6369 CAGAGGCTCATCTTCGCTGGGAAACAGCTTGAGGACGGCCGTACTCTTGCTGATTACAAC 6428 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 6429 ATTCAGAAGGAGTCCAC 6445 >seq5117 Length=577398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || ||| | || || |||||||| ||| | || || ||| Sbjct 112474 ATGCAAATCTTTGTGAAGACTCTCACCGGAAAAACCATAACCCTTGAGGTTGAAAGCTC- 112416 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| ||||| || || ||||| | || ||||| Sbjct 112415 CGATACCATTGATAATGTCAAAGCTAAGATCCAGGACAAGGAAGGGATTCCACCAGATCA 112356 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||||||||| ||||| | ||| | || || || || Sbjct 112355 GCAGAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGGCGCACACTCGCCGATTATAA 112296 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || ||||| |||| Sbjct 112295 CATCCAGAAGGAGTCGACCCTGCACTTGGT 112266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398717684429659