Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq5117 105 1e-17 seq31290 87.8 3e-12 seq5228 86.0 1e-11 >seq5117 Length=577398 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | |||||||||||||| ||| |||| |||||| | Sbjct 111789 TGCAGATATTTGTGAAAACCCTGACAGGAAAAACAATCACTCTTGAGGTAGAAAGCTCTG 111730 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| ||| ||||| ||| || || || || ||||| ||||| | Sbjct 111729 ACACCATTGACAATGTGAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 111670 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||||||||| || || || | || ||| || || | |||| ||||| | Sbjct 111669 AGCGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 111610 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||| ||| |||| || || Sbjct 111609 TCCAGAAAGAATCCACTCTCCACTTGGT 111582 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||||||||||||| |||| || ||| | | Sbjct 148177 TGCAGATCTTTGTGAAAACCCTCACTGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG 148118 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||||| ||| || || || || ||||| ||||| | Sbjct 148117 ACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGC 148058 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || || || | || ||| || || | |||| ||||| | Sbjct 148057 AGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACA 147998 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||| ||| | || || || Sbjct 147997 TCCAGAAAGAATCCACTCTTCACTTGGT 147970 Score = 87.8 bits (96), Expect = 3e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||||||||| ||| | || ||||| | | Sbjct 107949 TGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCGG 107890 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || || ||| ||| || ||||||||||| || || | Sbjct 107889 ACACGATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAGC 107830 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | ||||||||||| || || | || ||| || || | ||||||| || | Sbjct 107829 AGAGATTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAACA 107770 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 | || || ||||| || | ||||| || || Sbjct 107769 TTCAGAAGGAATCCACACTGCATTTGGTGTT 107739 >seq31290 Length=752448 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||||||||| || ||||| || ||||| || ||||| ||||||||||| || ||| Sbjct 237633 AAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATATTTGCTGGTAAACAATTGGAAGAT 237574 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGAC 146227 |||||| | |||||||||| || ||||| || || || Sbjct 237573 GGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAAC 237533 >seq5228 Length=576636 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || || || || ||| | || || || | | Sbjct 536508 TGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCAG 536567 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || ||| || || || || ||||| ||||||| Sbjct 536568 ATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAAC 536627 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || |||||||| || || | ||||| | || ||||||| Sbjct 536628 AAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAATA 536687 Query 146212 TACAAAAAGAATCGACT 146228 | || ||||| || ||| Sbjct 536688 TCCAGAAAGAGTCAACT 536704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785844749844520