Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq31046 98.7 4e-16 seq6699 98.7 4e-16 seq4340 98.7 4e-16 seq27274 93.3 2e-14 seq23677 93.3 2e-14 seq31230 91.5 5e-14 seq30178 89.7 2e-13 seq29955 89.7 2e-13 seq25119 89.7 2e-13 seq2450 86.0 2e-12 seq20345 80.6 1e-10 >seq31046 Length=92031 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 31670 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 31611 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 31610 CTGCTCTACCCCGC 31597 >seq6699 Length=24755 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 24707 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 24648 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 24647 CTGCTCTACCCCGC 24634 >seq4340 Length=32744 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 25040 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 24981 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 24980 CTGCTCTACCCCGC 24967 >seq27274 Length=221448 Score = 93.3 bits (102), Expect = 2e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 198516 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 198575 Query 50170 CTGCTCTAC 50178 ||||||||| Sbjct 198576 CTGCTCTAC 198584 >seq23677 Length=360942 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 272279 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 272338 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 272339 CTGCTCTACCCCGC 272352 >seq31230 Length=1130 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| ||| ||||||||| || ||||||| || Sbjct 648 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCAAGCTACCAAA 589 Query 50170 CTGCTCTACTCCG 50182 ||||||||| ||| Sbjct 588 CTGCTCTACCCCG 576 >seq30178 Length=117579 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||| |||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 75781 GTTGTGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 75840 Query 50170 CTGCTCTACTCCGC 50183 |||||||| |||| Sbjct 75841 TTGCTCTACCCCGC 75854 >seq29955 Length=800782 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||| | | |||| ||| ||||||||| |||||||||| || Sbjct 745312 GTTGCGGAGACAGGATTTGAACCTGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 745371 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 745372 CTGCTCTACCCCGC 745385 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | |||| || ||||||||| |||| ||||| || Sbjct 761703 GTTGCGGAGACGGGATTTGAACCCGTGACCTCAAGATTATGAGCCTTGCGAACTACCAAA 761762 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 761763 CTGCTCTACCCCGC 761776 >seq25119 Length=352517 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||| |||| |||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 30726 GTTGTGGAGATGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 30785 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 30786 CTGCTCTACCCCGC 30799 >seq2450 Length=635042 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | |||||||||||| | |||| | | ||||||||| |||||||||| || Sbjct 423983 GTTGCGGAGATGAGATTTGAACCCGTGACCTCAAAGTTATGAGCCTTGCGAGCTACCAAA 424042 Query 50170 CTGCTCTACTCCGCA 50184 ||||||||| ||||| Sbjct 424043 CTGCTCTACCCCGCA 424057 >seq20345 Length=394306 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||| ||| ||||||||||||||| | |||| ||| ||||||||| |||| ||||| || Sbjct 126983 GTTGTAGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGATCTACCAAA 126924 Query 50170 CTGCTCTACTCC 50181 ||||||||| || Sbjct 126923 CTGCTCTACCCC 126912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181532614354722