Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5117 111 1e-19 seq30011 89.7 3e-13 seq5684 89.7 3e-13 seq31290 82.4 5e-11 >seq5117 Length=577398 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | |||||||| || || || || || |||||||| || || Sbjct 108635 ACCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGA 108694 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | |||||| || |||||||| | | ||||| ||| | || Sbjct 108695 AAGTGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGG 108754 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||| | ||| |||| |||||| ||||| Sbjct 108755 GATTCCTTCCTTGTCCTGAATCTTGGCTTTGA-CATTGTCAATAGTGTCGGAGCTTTCCA 108813 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| ||||| || || | || |||||||||||||||||| Sbjct 108814 CCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 108863 Score = 109 bits (120), Expect = 4e-19 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||| || ||||| || || | || || | | | || || Sbjct 111582 ACCAAGTGGAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 111641 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| |||||||| | |||||||||||| | || | ||| || ||||| | Sbjct 111642 AGCTGCTTTCCAGCAAAAATGAGCCGCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 111701 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 ||||| |||| |||| ||| | |||||| ||| ||| || |||| ||||| || Sbjct 111702 ATTTTGGCTTTC-ACATTGTCAATGGTGTCAGAGCT---TTCTACCTCAAGAGTGATTGT 111757 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| ||||| | ||||| ||||| ||||||||| Sbjct 111758 TTTTCCTGTCAGGGTTTTCACAAATATCTGCATA 111791 Score = 109 bits (120), Expect = 4e-19 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| || | ||| | |||||||| || || || || || ||| Sbjct 148396 AAAATCTGCATGCCACCCCTGAGACGGAGGACCAAATGAAGGGTTGATTCCTTCTGGATG 148455 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | ||||||||| | || || | |||||| |||||||| || | | ||| Sbjct 148456 TTGTAGTCTGCAAGTGTGCGTCCATCCTCTAGTTGTTTACCGGCAAAGATGAGCCTTTGC 148515 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC 33689 || ||| | || | ||||| || || |||||| ||| | ||| |||| |||||| Sbjct 148516 TGGTCTGGTGGGATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTC 148574 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||||| |||| ||||| || || || || | || ||||||||||||||||| Sbjct 148575 GGAGCTTTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 148634 Query 33750 A 33750 | Sbjct 148635 A 148635 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || ||||| ||||| | Sbjct 148635 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGC 148694 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||||| |||||||| || | | |||||| ||| | || Sbjct 148695 AAGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 148754 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || ||||| ||| |||| ||||||| ||||| Sbjct 148755 GATCCCTTCCTTGTCCTGAATCTTGGCTTTCA-CATTGTCAATGGTGTCGGAGCTTTCCA 148813 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || || || || || | || |||||||||||||||||| Sbjct 148814 CCTCAAGAGTAATTGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 148863 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||| || ||||| || || | || || | | | || || Sbjct 147970 ACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTCA 148029 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || ||||| |||||||| | | |||||||||| | || | ||| || ||||| | Sbjct 148030 AGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTGA 148089 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| ||||| | | ||| | |||||| ||| || |||| || || ||||| Sbjct 148090 ATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTGTTTT 148148 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| ||||||||||||||| Sbjct 148149 TCCAGTGAGGGTTTTCACAAAGATCTGCATA 148179 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | |||||||| || || || || || |||||||| || | Sbjct 112019 ACCACCCCTGAGACGAAGTACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGC 112078 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | || || | |||||| || ||||| || | | ||||| ||| | || Sbjct 112079 AAGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGG 112138 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATT 33697 | ||||| || || |||||| ||| | ||| |||| |||||| |||| | Sbjct 112139 GATCCCTTCCTTATCCTGAATTTTGGCTTTGA-CATTGTCAATGGTGTCCGAGCTT---T 112194 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||| || || || || || || | || ||||||||||| ||||| Sbjct 112195 CCACCTCAAGGGTAATGGTCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 112246 >seq30011 Length=125740 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| ||| ||||||| ||| ||||| || || || ||| Sbjct 33932 AAAATCTGCATGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATG 33873 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | ||| || | | | || |||| || || || || || |||||||||||| Sbjct 33872 TTGTAATCCGCGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGC 33813 Query 33631 TGATCTTGCGGCACACCTTCTTTGTC 33656 || || |||| | ||||| ||||| Sbjct 33812 TGGTCCGGCGGAATCCCTTCCTTGTC 33787 >seq5684 Length=29006 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| ||| ||||||| ||| ||||| || || || ||| Sbjct 6259 AAAATCTGCATGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATG 6200 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | ||| || | | | || |||| || || || || || |||||||||||| Sbjct 6199 TTGTAATCCGCGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGC 6140 Query 33631 TGATCTTGCGGCACACCTTCTTTGTC 33656 || || |||| | ||||| ||||| Sbjct 6139 TGGTCCGGCGGAATCCCTTCCTTGTC 6114 >seq31290 Length=752448 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 ||||||||| | | ||| | || | || |||||| ||| ||||| ||||||||||| Sbjct 674290 GTCACCACCACGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTTTGAATGTTGTAATC 674231 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || ||| || || | || || | || || ||||| || || | | |||||| || | Sbjct 674230 GGCGAGAGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGG 674171 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATT 33697 || | || |||||||| || || ||| || | ||| | |||||| | Sbjct 674170 AGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATCGTGTCGGAGCTCT 674112 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | |||||||| || || || ||||| || || ||||||||||| Sbjct 674111 CCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTCTTGACGAAGATCTGCAT 674060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328572876995520