Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq26974 300 2e-75 seq3895 293 3e-73 >seq26974 Length=240166 Score = 300 bits (332), Expect = 2e-75 Identities = 409/563 (73%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||||||||| | ||||| | || || | |||| || |||| |||| | Sbjct 148567 GAGCCGCTGCTAACCCCGAACCCAGATCGATTCTGCATGTTTCCGATCCAGTACCCGGAA 148626 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || |||||||||||| | |||| |||| || || |||||||| || |||||||||||||| Sbjct 148627 ATCTGGGAAATGTACAAGAAAG-CCGAAGCTTCATTTTGGACGGCGGAGGAGGTCGACCT 148685 Query 1455836 CGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | ||| | ||| ||| |||| || || | | ||||||| || ||||||| || Sbjct 148686 -GTCGCAGGACATCCGCCAGTGGGAATCCCTAACGGCCGACGAGAAACACTTCATCACGC 148744 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| |||||||| || ||||||| || || ||||| ||| ||||| |||| | | Sbjct 148745 ACGTGCTCGCCTTCTT-CGCCGCCTCGGACGGAATCGTCCTCGAAAACCTCGCCGCCAGG 148803 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||||||| |||||| | | ||||| ||| || ||||| ||||| ||||||||| Sbjct 148804 TTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATC 148863 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| |||| ||||||||||| | || || ||| | || | | | | Sbjct 148864 GAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAATTCCGAC 148923 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 || ||| || | | ||||||||| | || |||||||||| || |||||||||||| Sbjct 148924 GAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTGCCAAAAAGGCCGAC 148983 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGC 1456193 ||||| | || |||||| || ||| || || || || ||| | || | | Sbjct 148984 TGGGCCCTAAATTGGATC------GACGGCTCGGAGACATTCGCGGAGAGACTGATAGCG 149037 Query 1456194 TTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 ||||| |||| || ||||| || |||||||||||||||||||| || |||||| | || Sbjct 149038 TTTGCTTGCGTGGAAGGCATATTCTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTAAAA 149097 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| | ||||| || || Sbjct 149098 AAGCGCGGGTTAATGCCGGGACT 149120 >seq3895 Length=609050 Score = 293 bits (324), Expect = 3e-73 Identities = 410/562 (73%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||||| || | | | ||||| | |||| | ||||||| || | |||| | Sbjct 437384 GAGCCGCTGCTAGCCCCAAATCCCGATCGATTTTG-CATGTTCCCGATTCAGTACCCACA 437442 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || |||||||||||| | |||| |||| || || ||||||||||| ||||| || || | Sbjct 437443 AATTTGGGAAATGTACAAGAAAG-CCGAAGCGTCGTTTTGGACCGCTGAGGAAGTTGATC 437501 Query 1455835 TCGGCGCC-GA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | ||| || | | | |||||||| | | || | || |||||| || ||| |||| Sbjct 437502 TTT-CGCAAGATCTCCG-CCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCAA 437559 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||| |||||||| || ||| ||| ||| |||||||| ||||||||| ||||| Sbjct 437560 GCACGTGCTCGCCTTCTT-CGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGAA 437618 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || |||| |||||||| | | ||||| ||| || ||||| ||||| ||||||| Sbjct 437619 GGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCA 437678 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| ||||||||||| |||| |||||||| || | || || ||| |||| ||| | | Sbjct 437679 TCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCG 437738 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||| ||| ||| ||||||| ||||||||| ||||| || | || || || ||| Sbjct 437739 ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCA 437798 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCG 1456191 |||||| | || |||||| || ||| || ||||| || ||| | | ||| Sbjct 437799 CGTGGGCGTTAAATTGGATC------GACGGCTCGGAGACTTTCGCGGAGAGATTAATCG 437852 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||||| |||| ||||| || || ||||| || ||||| |||||||| |||||||||| Sbjct 437853 CGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCCATATTTTGGCTCA 437912 Query 1456251 AGAAGCGCGGCCTCATGCCCGG 1456272 | |||||||| | ||||| || Sbjct 437913 AAAAGCGCGGGTTAATGCCGGG 437934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174654234890422