Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq26974 138 9e-28 seq3895 118 8e-22 >seq26974 Length=240166 Score = 138 bits (152), Expect = 9e-28 Identities = 383/582 (66%), Gaps = 4/582 (1%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| || || || | || || ||| |||||||||| ||||| | || ||||||| Sbjct 148604 TGTTTCCGATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTT 148663 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || || || || || || | | ||| | || ||| | ||| | Sbjct 148664 GGACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAGTGGGAATCCCTAACGGCCG 148723 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || ||||| || || | || | || || || || || ||||| || ||| Sbjct 148724 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGAATCGTCC 148783 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 ||||| | | |||| | ||||||| ||| | | || || || || | Sbjct 148784 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 148843 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 | || || ||||| ||||| || || || || || ||||||||| || || |||| | Sbjct 148844 ACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAA 148903 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-T 44065 ||||||| ||| || |||| ||| || || ||| || | ||||| || || | Sbjct 148904 CGTACATAAAAAATTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGT 148963 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125 ||| | | | || || ||||||||||| || ||||| | || | || | Sbjct 148964 GCGTTGCCAAA-AAGGCCGACTGGGCCCTAAATTGGATCGACGGCTCGGAGACATTCGCG 149022 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGC 44184 || |||| | |||||||| ||||||||||| ||||| || || | | ||| || Sbjct 149023 GAGAGACTGATAGCGTTTGCTTGCGTGGAAGGCATATTCTTCTCGGGCAGTTTCTGC-GC 149081 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 |||||||||||||| || || || || ||||| || | || || ||||| ||| |||| Sbjct 149082 GATATTTTGGTTAAAAAAGCGCGGGTTAATGCCGGGACTAACCTTCTCAAACGAGCTAAT 149141 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 || |||||||| | || |||||||| || |||||||| Sbjct 149142 CTCGCGAGATGAAGGACTCCACTGCGATTTCGCGTGCTTGTT 149183 >seq3895 Length=609050 Score = 118 bits (130), Expect = 8e-22 Identities = 237/346 (68%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || ||||| ||||| || || || || || ||||||||| || || || Sbjct 437657 TTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTA 437716 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || ||||||||||| |||| ||| | || | ||| | || || || || || Sbjct 437717 GAAACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTT 437776 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 || |||| || | ||||| ||||| | || ||||| | || |||| Sbjct 437777 CCCTGCGTCGCAA-AGAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTT 437835 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTG 44180 | || || | |||||||||| ||||| || |||||||| ||||| | |||| Sbjct 437836 CGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 437895 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 || ||||||||||| | || || || || || ||||| || || || || ||||| |||| Sbjct 437896 CG-CCATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGT 437954 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTT 44286 |||| || ||||| || | || |||||||| || ||| |||| Sbjct 437955 TAATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCTGTT 438000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397297451199655