Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq30011 129 5e-25 seq5684 129 5e-25 seq30177 113 4e-20 seq5228 113 4e-20 seq26060 111 1e-19 seq5117 105 6e-18 seq17788 104 2e-17 seq31290 98.7 8e-16 >seq30011 Length=125740 Score = 129 bits (142), Expect = 5e-25 Identities = 178/248 (72%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || | ||| | ||| || || ||||| |||||||| ||| Sbjct 33238 TGCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGG 33179 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||||||||||||||| |||||| | || |||||||| || ||||| | Sbjct 33178 CCAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAG 33119 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | | || | ||||| | | || | Sbjct 33118 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 33059 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 |||| ||||| || | ||||| || || |||||||| ||||| ||||| || ||||| Sbjct 33058 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT--CTTTTAAAA 33001 Query 27259 ATTTATTA 27266 ||| ||| Sbjct 33000 GTTTCTTA 32993 >seq5684 Length=29006 Score = 129 bits (142), Expect = 5e-25 Identities = 178/248 (72%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || | ||| | ||| || || ||||| |||||||| ||| Sbjct 5109 TGCCTCCACGGAGACGAAGCACAAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGG 5050 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||||||||||||||| |||||| | || |||||||| || ||||| | Sbjct 5049 CCAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAG 4990 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | | || | ||||| | | || | Sbjct 4989 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 4930 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 |||| ||||| || | ||||| || || |||||||| ||||| ||||| || ||||| Sbjct 4929 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT--CTTTTAAAA 4872 Query 27259 ATTTATTA 27266 ||| ||| Sbjct 4871 GTTTCTTA 4864 >seq30177 Length=790404 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| || ||| || |||| |||||||| || || Sbjct 117866 GTTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGCTTTCC 117808 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 117807 GGCGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTT 117748 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || ||||| ||||| | || ||||| || || Sbjct 117747 GACATTGTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGT 117688 Query 27230 TTTCACAAAGATTTGCATAGCTGC 27253 |||||| ||||| ||||| ||||| Sbjct 117687 TTTCACGAAGATCTGCATGGCTGC 117664 >seq5228 Length=576636 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | || | || | ||| | || || || || || || ||||| ||| Sbjct 487147 TGCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCGG 487088 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| |||||||| || || || | || || | ||| || ||||||| Sbjct 487087 CCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCG 487028 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | | || | Sbjct 487027 GAATTCCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCCGAGCTCTCGA 486968 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| ||||| |||| |||||| |||| |||||||||||||| |||||| Sbjct 486967 CTTCGAGAGTAATAGTTTTGCCGGTCAAGGTTTTCACAAAGATCTGCATA 486918 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | || | || | ||| | ||| || || || || || ||||| ||| Sbjct 487375 TGCCTCCGCGGAGACGAAGGACGAGATGGAGCGTTGACTCCTTCTGTATGTTGTAATCGG 487316 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| |||| |||||||| || || || | || || | ||| |||||||| | Sbjct 487315 CCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGGG 487256 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||| || | | | || | ||||| | | || | Sbjct 487255 GGATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 487196 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| |||| |||||| ||||| |||||||| ||||||||||| Sbjct 487195 CTTCGAGAGTAATAGTTTTGCCAGTCAGGGTTTTCACGAAGATTTGCAT 487147 >seq26060 Length=987722 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTAC 27108 ||| || || ||||| || ||||||||| || ||| || |||| |||||||| || | Sbjct 875334 CGTTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGCTTTC 875392 Query 27109 CGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTT 27168 || || | ||||||||||| || ||||| || | ||||| || || ||||||| | Sbjct 875393 CGACGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCT 875452 Query 27169 TCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAG 27228 | | | || | ||||| | | ||| || ||||| ||||| | || ||||| || | Sbjct 875453 TGACATTGTCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGG 875512 Query 27229 TTTTCACAAAGATTTGCATAGCTGC 27253 ||||||| ||||| ||||| ||||| Sbjct 875513 TTTTCACGAAGATCTGCATGGCTGC 875537 >seq5117 Length=577398 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | || || ||||| || ||||| ||||| || || |||| | || || Sbjct 148882 ACCAAGTGGAGGGTTGATTCTTTCTGGATATTATAGTCAG-CAAGTGTGCGACCATCCTC 148940 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||||||| || | || || | ||| ||||| || || | || || || || Sbjct 148941 GAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTG 149000 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| ||| | | || | ||||| | | |||||| || || ||||| | || Sbjct 149001 GATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTT 149060 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || ||||||||||||||||||||||| Sbjct 149061 GCCGGTGAGAGTTTTCACAAAGATTTGCAT 149090 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || ||||||| ||||| ||||| || || | |||||| || Sbjct 111636 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCGCTGCTGATCTGGTGGGATACCCTCCTTG 111695 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || ||| ||||| | || | ||||| | | ||| || || ||||| || Sbjct 111696 TCTTGAATTTTGGCTTTCACATTGTCAATGGTGTCAGAGCTTTCTACCTCAAGAGTGATT 111755 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || ||||| ||||||||||| || |||||| Sbjct 111756 GTTTTTCCTGTCAGGGTTTTCACAAATATCTGCATA 111791 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || ||||| |||||||| | | | || | ||||| Sbjct 108426 ACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCTTCT 108485 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || || | ||| ||||| || || | ||||| || || Sbjct 108486 AGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGA 108545 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | |||||| || | |||||||| ||| Sbjct 108546 ATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTTTTA 108605 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| ||||||||||| || |||||| Sbjct 108606 CCAGTCAGGGTTTTCACAAAAATCTGCATA 108635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || || ||||| | |||| | || || Sbjct 108882 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGACCATCCTCA 108941 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| || | ||||| | || || || || || | || || ||||| | Sbjct 108942 AGCTGTTTACCAGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 109001 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | | | || | ||||| | | ||| || || || ||||| | ||| Sbjct 109002 ATCTTGGCTTTTACGTTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 109061 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||||||||| Sbjct 109062 CCGGTGAGAGTCTTCACAAAGATTTGCAT 109090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || ||||||| | ||| ||||| || || | |||||| || Sbjct 148024 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 148083 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || ||||| | | || | ||||| | |||||| || ||||| || Sbjct 148084 TCTTGAATTTTTGCTTTCACGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATT 148143 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || || |||||||||||||| |||||| Sbjct 148144 GTTTTTCCAGTGAGGGTTTTCACAAAGATCTGCATA 148179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || |||||||| | | || | ||||| Sbjct 148198 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCATCTTCA 148257 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| ||||| | || | | ||||||||| || || | ||||| || || | Sbjct 148258 AGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCCTTGTCCTGG 148317 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | | |||||| || | |||||||| || Sbjct 148318 ATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTCTTA 148377 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| ||||||||||| || ||||| Sbjct 148378 CCAGTCAGGGTTTTCACAAAAATCTGCAT 148406 >seq17788 Length=1137600 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | | ||| ||||||||||||| || ||| Sbjct 831012 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGCCCGTCTTCGAGCTGCTTGCCG 831071 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | ||||| || || |||||| || Sbjct 831072 GCGAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 831131 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || | ||||| | || ||||| || ||| Sbjct 831132 ACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTT 831191 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 831192 TTCACGAAGATCTGCAT 831208 >seq31290 Length=752448 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || || | ||||| |||| |||||||| || ||| Sbjct 673800 GTCGACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCG 673741 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || ||||| || ||||| || | || || || || ||||||| || Sbjct 673740 GCGAAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTG 673681 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || ||||| || | ||||| |||| |||| Sbjct 673680 ACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTT 673621 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 673620 TTCACAAAGATCTGCAT 673604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424764889816872