Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq28498 105 8e-18 seq8009 104 3e-17 seq148 104 3e-17 seq3895 93.3 5e-14 seq27564 89.7 6e-13 seq25319 86.0 8e-12 seq19232 86.0 8e-12 >seq28498 Length=175162 Score = 105 bits (116), Expect = 8e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 111930 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 111987 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 163425 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 163484 Query 111988 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 112047 |||| | |||||||||| | | |||||| | | |||||||||| || ||| ||| Sbjct 163485 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 163544 Query 112048 GATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAG 112107 || || || | |||| ||| ||||| | ||| || |||| | | | || | || Sbjct 163545 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 163603 Query 112108 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 163604 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 163663 Query 112167 G 112167 | Sbjct 163664 G 163664 >seq8009 Length=546753 Score = 104 bits (114), Expect = 3e-17 Identities = 252/380 (66%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || || | | | ||| |||||| || ||| | | ||||| || || Sbjct 251958 ATCAAAACGTCCAGGCCTCAATAAGGCAGAATCAAGAATGTCCGCCCTGTTAGTTGCAGC 252017 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | | ||||| |||||||| || || | | || |||| Sbjct 252018 AATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAG 252077 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACC 11629 || || ||||| |||||||| || | | | | |||| | | ||| | || || Sbjct 252078 GGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTTTGTCTTCCAACG 252135 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||| | || ||||| || || ||| || ||| | | || ||| Sbjct 252136 GCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA 252195 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || || ||||| ||||||||||||||||| ||||| | | | || Sbjct 252196 TCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTCAGAACCTGATATG 252255 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 || ||||| ||| | |||||| || || || ||| || || ||||| || || Sbjct 252256 GAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTT 252315 Query 11810 CCTGGCTTACCCGCGAGAAG 11829 ||||| ||| ||||||| Sbjct 252316 CCTGGAGGACCAACGAGAAG 252335 >seq148 Length=65018 Score = 104 bits (114), Expect = 3e-17 Identities = 252/380 (66%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || || | | | ||| |||||| || ||| | | ||||| || || Sbjct 25803 ATCAAAACGTCCAGGCCTCAATAAGGCAGAATCAAGAATGTCCGCCCTGTTAGTTGCAGC 25862 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 ||| || | || ||||| | | ||||| |||||||| || || | | || |||| Sbjct 25863 AATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGCTGGTTAAG 25922 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACC 11629 || || ||||| |||||||| || | | | | |||| | | ||| | || || Sbjct 25923 GGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTTTGTCTTCCAACG 25980 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||| ||||| | || ||||| || || ||| || ||| | | || ||| Sbjct 25981 GCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGA 26040 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 || || || || ||||| ||||||||||||||||| ||||| | | | || Sbjct 26041 TCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTCAGAACCTGATATG 26100 Query 11750 TGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 || ||||| ||| | |||||| || || || ||| || || ||||| || || Sbjct 26101 GAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAAGAGTCTTCCCAGTT 26160 Query 11810 CCTGGCTTACCCGCGAGAAG 11829 ||||| ||| ||||||| Sbjct 26161 CCTGGAGGACCAACGAGAAG 26180 >seq3895 Length=609050 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||||||||| || || | || |||||||| || || ||||| | || Sbjct 437980 GTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 437921 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| || | |||| | || ||||| || ||| |||||||| || |||||||| || Sbjct 437920 GCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 437861 Query 122790 CGCAAACGC 122798 |||||||| Sbjct 437860 AGCAAACGC 437852 >seq27564 Length=213285 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| | ||||||||| |||||||| || || || || | ||| || | ||| | ||| Sbjct 94294 CTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 94353 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | | |||||| | | ||||||||||||| ||| ||| || || | || Sbjct 94354 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGC 94413 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 |||| ||| ||||| | || || |||| | | | || | || | || |||| Sbjct 94414 AACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 94471 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 94472 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 94521 >seq25319 Length=6653 Score = 86.0 bits (94), Expect = 8e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||||||| || || | | |||||||| || || ||||| ||||| ||| || Sbjct 5361 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 5304 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 5303 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 5244 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| || ||| | ||||| | ||| | || || || || |||||| Sbjct 5243 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 5184 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAG 11744 ||||||| ||| ||||| | || ||||| Sbjct 5183 ACAAACAACTCAACAAACTCTGAGGCAG 5156 >seq19232 Length=403008 Score = 86.0 bits (94), Expect = 8e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||||||| || || | | |||||||| || || ||||| ||||| ||| || Sbjct 366712 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 366655 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 366654 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 366595 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| || ||| | ||||| | ||| | || || || || |||||| Sbjct 366594 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 366535 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAG 11744 ||||||| ||| ||||| | || ||||| Sbjct 366534 ACAAACAACTCAACAAACTCTGAGGCAG 366507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627775048557600