Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq26974 147 2e-30 seq3895 105 7e-18 >seq26974 Length=240166 Score = 147 bits (162), Expect = 2e-30 Identities = 379/564 (67%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| || | ||||||||| | |||| |||| |||||||| | |||||| ||| Sbjct 148606 TTTCCGATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCTTCATTTTGG 148665 Query 59622 TCCGTCGAGGAGATTGACCT--CGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACG 59679 | | |||||| | ||||| ||| ||| | | | | ||||| || | || Sbjct 148666 ACGGCGGAGGAGGTCGACCTGTCGCAGGACATCCGCCAG--TGGGAATCCCTAACGGCCG 148723 Query 59680 ACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGA 59739 ||||| | || ||||||| | || || ||||||||||| || || ||||| || Sbjct 148724 ACGAGAAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGAATCGTCC 148783 Query 59740 TGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 | ||||| | | | | || || || ||||| | ||||||| || | |||| Sbjct 148784 TCGAAAACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCT 148843 Query 59800 ACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 ||| | || ||| || |||| ||||||||||| | |||||||||| | | || Sbjct 148844 ACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAA 148902 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAG-GCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | || | || || | || || ||| || | | | || || ||| | || ||| | || Sbjct 148903 ACGTACATAAAAAATTCCGACGAAAAGAGCCGCT-TATTTCGCGCCTTTGAAACGGTGCC 148961 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 || ||| |||| || || |||||| | | ||||| || || |||| |||| Sbjct 148962 GTGC-GTTGCCAAAAAGGCCGACTGGGCCCTAAATTGGATCGACGGCTCGGAGA--CATT 149018 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | || ||||| ||||| ||||||||||| || |||||||| ||| ||||| Sbjct 149019 CGCGGAGAGACTGATAGCGTTTGCTTGCGTGGAAGGCATATTCTTCTCGGGCAGTTTCTG 149078 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || ||| | |||||||| || | |||||||| || | ||||| |||||||| Sbjct 149079 CGCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCGGGACTAACCTTCTCAAACGAGCT 149138 Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118 || || || || || || ||||| Sbjct 149139 AATCTCGCGAGATGAAGGACTCCA 149162 >seq3895 Length=609050 Score = 105 bits (116), Expect = 7e-18 Identities = 295/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| |||| ||| ||||| || || ||||||||||| || || || || || Sbjct 437540 GACGAGAAGCACTTCGTCAAGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTC 437599 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || || | | | | || | ||| |||||| | |||||||| || | ||| Sbjct 437600 CTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTTC 437659 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | || ||| || |||| ||||||||||| | ||||||||| | | || Sbjct 437660 TACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 437718 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | | |||| || | || || ||| |||| || | ||||| |||||| | || Sbjct 437719 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 437778 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCT-GGAGCATCATT 59974 | || || | | ||||| ||||| | | ||||| || || |||| | || Sbjct 437779 CTGC-GTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACT--TT 437835 Query 59975 TGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTG 60034 || | | | || || ||||| |||||||| || || |||||||| || || || Sbjct 437836 CGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 437895 Query 60035 TGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCT 60094 || || || |||||||||||||| || | |||||||| | | ||||| |||||| | Sbjct 437896 CGCCATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTT 437955 Query 60095 GATTTCCCGGGACGAGGGCCTCCA 60118 || || || || ||||| ||||| Sbjct 437956 AATCTCGCGAGATGAGGGTCTCCA 437979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548300377934640