Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5228 91.5 1e-13 seq31290 86.0 4e-12 seq30011 82.4 5e-11 seq5684 82.4 5e-11 seq5117 82.4 5e-11 >seq5228 Length=576636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || || ||||| ||||| | || ||||| ||| || Sbjct 536279 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 536338 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || || || || || ||||| || || | || || | Sbjct 536339 GACACGATCGATAAC--GTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACC 536396 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || |||||||| |||||||| |||| |||| |||| ||||||||| Sbjct 536397 AGCAGAGGCTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCTTGGCCGATTACA 536456 Query 27968 ACATCCAAAAAGAGAGCACTTTGCAT 27993 ||||||||||||| ||| |||||| Sbjct 536457 ACATCCAAAAAGAATCCACCTTGCAT 536482 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| || ||||| ||| |||||| | || ||||| ||| || Sbjct 487147 ATGCAAATCTTCGTGAAAACCCTGACTGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 487206 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| || || | || ||| | Sbjct 487207 GACACCATCGACAAC--GTCAAGGCGAAGATTCAAGACAAGGAGGGAATCCCCCCGGATC 487264 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| ||||| || | || |||| |||| |||| ||||||||| Sbjct 487265 AGCAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGATTACA 487324 Query 27968 ACATCCAAAAAGAG 27981 |||| || || ||| Sbjct 487325 ACATACAGAAGGAG 487338 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 12/198 (6%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| | || || ||| |||||| | || ||||| ||| | Sbjct 486919 ATGCAGATCTTTGTGAAAACCTTGACCGGCAAAACTATTACTCTCGAAGTCGAGAGCTCG 486978 Query 27850 GACGATGTACAATCGGTCAAACAAAA----AATAGCC--GACAAAGAAGGTGTTCCGATG 27903 ||| || |||| ||| ||| || | || ||||| || || ||||| | Sbjct 486979 GAC-----ACCATCGA-CAACGTAAAGGCCAAGATCCAAGACAAGGAGGGAATTCCGCCG 487032 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || ||||| ||||| || | || |||| |||| |||| ||||| Sbjct 487033 GACCAGCAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGAT 487092 Query 27964 TACAACATCCAAAAAGAG 27981 ||||||||||| || ||| Sbjct 487093 TACAACATCCAGAAGGAG 487110 >seq31290 Length=752448 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||| | || || || || || | || || || ||| || Sbjct 673604 ATGCAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGAGAGCTCC 673663 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| ||||| || || ||||| ||||| |||| ||| | Sbjct 673664 GACACGATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCACCGGACC 673721 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||| | || || |||||||| || | || |||| |||| |||| | ||||||| Sbjct 673722 AGCAGCGGCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGATTACA 673781 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| ||| | || | || | ||| | || |||||| Sbjct 673782 ACATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGC 673831 >seq30011 Length=125740 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || ||||| | || ||||| ||| Sbjct 33007 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGC 33066 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || |||| ||||| || || ||||| ||||| | || || Sbjct 33067 TCCGACACCATCGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGG 33124 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||||||||| | || |||| |||| |||| |||||| Sbjct 33125 ACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATT 33184 Query 27965 ACAACATCCAAAAAGA 27980 |||| |||||||| || Sbjct 33185 ACAATATCCAAAAGGA 33200 >seq5684 Length=29006 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || || ||||| | || ||||| ||| Sbjct 4878 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGC 4937 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || |||| ||||| || || ||||| ||||| | || || Sbjct 4938 TCCGACACCATCGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGG 4995 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||||||||| | || |||| |||| |||| |||||| Sbjct 4996 ACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATT 5055 Query 27965 ACAACATCCAAAAAGA 27980 |||| |||||||| || Sbjct 5056 ACAATATCCAAAAGGA 5071 >seq5117 Length=577398 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || ||||| ||| ||| || |||| || |||||| || Sbjct 108862 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 108803 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| |||||| || || ||||| ||||| | || || | Sbjct 108802 GACACTATTGACAAT--GTCAAAGCCAAGATTCAGGACAAGGAAGGAATCCCACCAGACC 108745 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | |||||||| || |||||| | || || | |||| | || || |||| Sbjct 108744 AGCAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGTCGCACACTTTCAGACTACA 108685 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| || || || | |||||||| Sbjct 108684 ACATCCAGAAGGAATCAACCCTTCATTTGGT 108654 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || ||||| || ||| || | || || |||||| | Sbjct 148406 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 148347 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| ||||| || || ||||| || || | || || | Sbjct 148346 GACACGATCGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATC 148289 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | || ||||||| |||||||| |||||| | || || | || | |||| | || ||| Sbjct 148288 AACAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTG-CTGACTAC 148230 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| || | |||||||| | ||| | ||||| || Sbjct 148229 AACATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGG 148180 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || ||||| || ||| || |||| || |||||| || Sbjct 148634 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 148575 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||||| || || ||||| | || || | Sbjct 148574 GACACCATTGACAAT--GTCAAAGCCAAAATTCAGGATAAGGAAGGGATCCCACCAGACC 148517 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 ||||| || | || |||||||| |||||| | || || | ||||| |||| | || ||| Sbjct 148516 AGCAAAGGCTCATCTTTGCCGGTAAACAACTAGAGGATGGACGCACACTTG-CAGACTAC 148458 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||| || || || | |||||||| Sbjct 148457 AACATCCAGAAGGAATCAACCCTTCATTTGGT 148426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355720443263637