Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq31290 107 2e-18 seq17788 107 2e-18 seq5117 96.9 3e-15 seq5228 84.2 2e-11 >seq31290 Length=752448 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | ||| ||||| | || |||||| || || || || ||||||||||| Sbjct 674058 CCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCC 673999 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| ||||| || || || || | ||||||||| | ||| Sbjct 673998 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGG 673939 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | |||||||||| ||| ||| || | ||| | | | ||| ||| |||||| Sbjct 673938 ATCCCCTCTTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTCCAC 673880 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || ||||| || || || ||||| ||||| Sbjct 673879 CTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 673832 >seq17788 Length=1137600 Score = 107 bits (118), Expect = 2e-18 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || || || || ||||| | ||||| |||| || Sbjct 830999 CACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGCCCGTCTTC 831058 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| || || || || |||||||||| ||||||| | || ||| |||||| Sbjct 831059 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG-ATGCCCTCCTTGTCCT 831117 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| ||| |||| ||| | | | || ||| |||||||| |||| ||| || | Sbjct 831118 GGATCTTCGCCTTGA-CGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTC 831176 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || ||||| || ||||| |||||||| Sbjct 831177 TTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 831211 >seq5117 Length=577398 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || ||||||||||| ||||| || | || ||| Sbjct 112266 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTCA 112325 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| ||||| | |||||| || ||||| | || || |||||| Sbjct 112326 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCT-TCCTTGTCCTG 112384 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| | | | |||||| || || || | || || |||| Sbjct 112385 GATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTT 112444 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||| || || || || |||||||||||||||| Sbjct 112445 TCCGGTGAGAGTCTTCACAAAGATTTGCATCT 112476 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||||| || || ||| ||| || || ||||| || |||||| Sbjct 108180 CCTCCACGAAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCA 108239 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | | || |||||||| || || ||||| ||||| | ||||||||| | || Sbjct 108240 AGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGG 108299 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGA---CTC 39233 | || || ||||| ||| | | | || | | | | || ||||| ||| ||| Sbjct 108300 ATGCCTTCCTTGTCT-TGAATCTTAGCTTTAACATTGTCAATAGTATC---CGAACTCTC 108355 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | || || | || || || || || ||||||||||||||||| Sbjct 108356 AACTTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 108406 >seq5228 Length=576636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || ||||| || |||||||| | || || |||| || ||||| Sbjct 487350 ATGGAGCGTTGACTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTG 487291 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| ||||| | |||||| || | ||| | | ||| ||||| || || Sbjct 487290 CTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGGGGGATTCCCTCCTTGTCTTGAATCTT 487231 Query 39201 CTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 | |||| ||| | | | || ||| ||| || || | || ||| |||| || | Sbjct 487230 CGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCAG 487172 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| || ||||||||||| Sbjct 487171 TCAGGGTTTTCACGAAGATTTGCAT 487147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429374250367403