Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3895 194 1e-44 seq26974 168 6e-37 >seq3895 Length=609050 Score = 194 bits (214), Expect = 1e-44 Identities = 575/879 (65%), Gaps = 7/879 (1%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| ||||| |||| |||||| ||||||||||| || |||| | ||| || Sbjct 438285 TTTTGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGC 438226 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||||| ||||| | | |||| | || | || || || | | | Sbjct 438225 TCCATCCAATCAAAAGGATTCGCCACACTGTACAGCTTCCCGTACCCAAGCGCACCCAAC 438166 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 |||| || || ||||| ||||| ||||| ||||| | ||| | || || || | || Sbjct 438165 AATCTATCTGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCAAC 438106 Query 4437 -CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || ||||| | || ||||||| ||||| || || || | | || Sbjct 438105 GCGCAC-GGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAA 438047 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 | || | | | || | | | || | || | | |||| | ||||| || Sbjct 438046 CGCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGTACAACAGGCACGCGAA 437987 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 ||| || || | ||| || |||| || | || | ||||| || || |||||||| |||| Sbjct 437986 ATCGCAGTGGAGACCCTCATCTC-GCGAGATTAACTCGTTTGAGAATGTTAATCCCGGCA 437928 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 |||| || | |||||| ||||||||||| ||| ||| ||| || ||||| || || | Sbjct 437927 TTAACCCGCGCTTTTTGAGCCAAAATATGGCGCAAAAACTCCCTGAGAAGAAAATCCCCT 437868 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATT 4734 | ||| |||||||| | ||||| | |||| | || | | | | ||||| | Sbjct 437867 CCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGT-CT--CCGAGCCGTCGATCCAAT 437811 Query 4735 TTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATT 4794 |||| ||||| | ||||| || ||||| |||| || | || |||| ||| | Sbjct 437810 TTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGAC 437751 Query 4795 TACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 | ||||| | ||||| || ||||| |||| || || |||||||| || | Sbjct 437750 GGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGT 437691 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 | || || || || || || || || ||||| ||| | || || | || || || | Sbjct 437690 GGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCT 437631 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | || ||| | | | ||| ||| || || ||||| |||||| || || | Sbjct 437630 CCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGG 437571 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 | | || || | |||| || ||||||| | || | ||||||| | | || Sbjct 437570 CGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGAT 437511 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 ||| | | ||||||||| ||| | ||||||||||||||||| ||||| |||||||| Sbjct 437510 CTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTT 437451 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 |||||| | || ||||||||||| | ||| ||||| Sbjct 437450 CCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATC 437412 >seq26974 Length=240166 Score = 168 bits (186), Expect = 6e-37 Identities = 591/912 (65%), Gaps = 13/912 (1%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||||||||| |||| ||| || |||||||| || || |||| | |||||| Sbjct 149468 TTTTGGTATTCCCCGACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAAC 149409 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||||||||||| || ||| | | || | ||| || || | | | Sbjct 149408 TCCATCCAATCAAACGGATTCGTCGCGCCGAACACCTTCCCGCACCCGAGCGCACCCAAC 149349 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 || | || || ||||| ||||| ||||| ||||| | | | ||| || || | ||| Sbjct 149348 AACCTATCTGCCACAAACTCTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAAT 149289 Query 4437 -CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || ||||||| || ||||| ||||| || || || | | ||| Sbjct 149288 GCGCAC-GGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTAT 149230 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAA 4554 | || | || | | ||| || || || | | |||| || ||||| | Sbjct 149229 CCCCTTCACGCGCTCCTCGCTTAATTTGTTC-CTCAGCAAGCTGTACAACAAGCACGCGA 149171 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 |||| || || | ||||| |||| || | || || ||||| || || |||| ||| ||| Sbjct 149170 AATCGCAGTGGAGTCCTTCATCTC-GCGAGATTAGCTCGTTTGAGAAGGTTAGTCCCGGC 149112 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCG--GCAAATGACCCAGAAAAGAATATGC 4671 ||||| || | |||||| | ||||||||| ||| | || || || |||| |||||||| Sbjct 149111 ATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCGAGAA--GAATATGC 149054 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 |||| ||| |||||||||| | || | |||| | | | | | | |||| Sbjct 149053 CTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATG---TCTCCGAGCCGTCGATCC 148997 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 | |||| ||||||| || ||||| ||||||||| | || | | ||| ||||| Sbjct 148996 AATTTAGGGCCCAGTCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATA 148937 Query 4792 ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 | || ||||| | | || || || || |||| || || |||||||| | Sbjct 148936 AGCGGCTCTTTTCGTCGGAATTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGG 148877 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 | || || || || || || || || || ||||| ||| | || || | ||||| | Sbjct 148876 AGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGA 148817 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 |||| || || || | | | ||||||| || || ||||| ||| || || | Sbjct 148816 CTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCCGAGGCGGCGAAGA 148757 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 | || | || || | || |||| | ||||| | | | || || ||| ||| | | Sbjct 148756 AGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGATTCCCACTGGCGGA 148697 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 || | | | || || || || | |||||||| || ||||| ||||| ||||||| Sbjct 148696 TGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACA 148637 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAA 5151 | ||| || || || ||||| ||||||| ||| |||| | ||| || || | Sbjct 148636 TTTCCCAGATTTCCGGGTACTGGATCGGAAACATGCAGAATCGATCTGGGTTCGGGGTTA 148577 Query 5152 GAAGCGGTTCTT 5163 | ||||| |||| Sbjct 148576 GCAGCGGCTCTT 148565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426879246044423