Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3895 156 6e-33 seq27564 114 2e-20 seq26974 113 6e-20 seq28498 109 8e-19 seq29811 89.7 7e-13 >seq3895 Length=609050 Score = 156 bits (172), Expect = 6e-33 Identities = 393/595 (66%), Gaps = 2/595 (0%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || || ||||| ||||||| ||||| ||||| || ||||| | Sbjct 437994 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATTAACTCGTTTGAGAATGTTAAT 437935 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||||| || || |||||||||||||||| || ||| ||| | || || ||||| Sbjct 437934 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATA-TGGCGCAAAAACTCCCTGAGAAGAA 437876 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 || || || ||| ||||| ||| | | |||||| || || | | | || || Sbjct 437875 AATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTCGAT 437816 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| | ||||| || ||||| || || || | || || || || | ||| Sbjct 437815 CCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAA 437756 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 |||| ||| ||||| | | ||||| | |||||| |||| | || |||||||| Sbjct 437755 GAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTC 437696 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 |||||| || || || || || || || || ||||| || | ||| || | || ||| Sbjct 437695 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTG 437636 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 |||||||| || | | | || | ||||| || || || || || || || Sbjct 437635 GACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAA 437576 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATT 48619 || || | || || || | || | || |||| | || || | ||||| Sbjct 437575 GAAGGCGAGCACGTGCTTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCG 437516 Query 48620 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 || ||||| || | ||| ||||| ||||| |||||||| || || || ||||| || || Sbjct 437515 GAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTA 437456 Query 48680 CATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 ||| | ||| || | ||| || || ||||| || ||||| || |||||| Sbjct 437455 CATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGATTT 437401 >seq27564 Length=213285 Score = 114 bits (126), Expect = 2e-20 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | ||| ||||||||||| ||||||||| || ||| | | || | Sbjct 94307 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 94366 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||||| || || ||||| | ||| ||||| || || || || | |||||| Sbjct 94367 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 94425 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 78576 |||||| || |||||||| | | ||| | || | ||||| | ||| || | |||| Sbjct 94426 CATATGTTGGGGTCTTTCTA-CAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 94484 Query 78577 AAGTTTTAAAACCAAAATA 78595 ||||| || |||||||| Sbjct 94485 GGGTTTTGAAGCCAAAATA 94503 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | |||| | || | || |||||| | ||| || Sbjct 93942 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 94001 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| |||||||||||| |||| ||||| || || || Sbjct 94002 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 94061 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || || | ||| || ||||| ||||| || || Sbjct 94062 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 94121 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 94122 CCTTCAATACTATCATCTTTCATG 94145 >seq26974 Length=240166 Score = 113 bits (124), Expect = 6e-20 Identities = 385/598 (64%), Gaps = 4/598 (1%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || ||||| || || || |||||||||| |||| ||||| || || || Sbjct 149180 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTTGAGAAGGTT 149121 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||||| || || ||||| | ||||||||| || |||| || || ||| Sbjct 149120 AGTCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 149061 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC--GTTGT 48315 ||||||||||| ||| ||||| || | || |||||||| | || || | | || Sbjct 149060 AATATGCCTTCCACGCAAGCAAACGCTATCAG--TCTCTCCGCGAATGTCTCCGAGCCGT 149003 Query 48316 GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||| | | ||||| || ||||| || || || |||| ||||| | || Sbjct 149002 CGATCCAATTTAGGGCCCAGTCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGC 148943 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||| | | | ||||| | | || ||| | ||| || |||| | || |||| Sbjct 148942 GAAATAAGCGGCTCTTTTCGTCGGAATTTTTTATGTACGTTTCTAGAAGGAGCGAGTACA 148883 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 |||||||||| || || || || || || || || ||||| || | ||| || | || Sbjct 148882 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGA 148823 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || || || | || | | || | || || || ||||| || || | Sbjct 148822 CTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCGTCCGAGGCGG 148763 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGT 48615 | || || || | || || | || || | ||| |||| || || || | ||| | Sbjct 148762 CGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCCGTTAGGGATTCCCACT 148703 Query 48616 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTT 48675 ||| || | || | || || || || || ||||||||||| || || ||||| | Sbjct 148702 GGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCT 148643 Query 48676 TATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 | ||||| | ||| || || ||| ||||| || || || |||| || ||| || Sbjct 148642 TGTACATTTCCCAGATTTCCGGGTACTGGATCGGAAACATGCAGAATCGATCTGGGTT 148585 >seq28498 Length=175162 Score = 109 bits (120), Expect = 8e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| |||||||| | ||| ||||||||||| || |||||| ||| || | | || Sbjct 163449 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 163508 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| |||||| || || || || | ||| |||||||| | | || | ||||| Sbjct 163509 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 163567 Query 78517 ACATATGCTGAGGTCTTTCAAC 78538 ||||||||||||||||||| || Sbjct 163568 ACATATGCTGAGGTCTTTCTAC 163589 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| |||||||| | ||| | ||| || | |||| | || | || |||||| | ||| || Sbjct 163119 ACCACCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 163178 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| || ||||||||| ||||||||||||| |||| ||||| || || || Sbjct 163179 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 163238 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || ||||| || || || | ||| || ||||| || || ||||| Sbjct 163239 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 163298 Query 78338 ACCCTCTATACTGTCATCCATCAT 78361 || || ||||| ||||| |||| Sbjct 163299 TCCTTCAATACTATCATCTTTCAT 163322 >seq29811 Length=134906 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | |||| || |||| |||| | ||| | ||| || | ||| || Sbjct 114315 CCCCCTTGATCAACATATTGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 114256 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || | ||||||||||||| || ||||| || || || |||||| |||||| Sbjct 114255 TTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGAG 114196 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| ||| || ||| | ||| || |||| ||||| || || Sbjct 114195 AGACCAATTCCTCCAGCCGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATG 114136 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || |||||||| ||||| | |||||| |||||| Sbjct 114135 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 114094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694384584943840