Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20medica_20[genbank_20GCA_5F002013955.1_202017-03-03] 32,731 sequences; 404,954,971 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq28498 129 8e-25 seq27564 129 8e-25 seq29811 107 3e-18 seq26974 93.3 6e-14 >seq28498 Length=175162 Score = 129 bits (142), Expect = 8e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| |||||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 163119 ACCACCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 163178 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| || ||||||||| ||||||||||||| ||||||||| || || || Sbjct 163179 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 163238 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 163239 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 163298 Query 76933 GCCCTCTATACTATCATCCATCAT 76956 || || ||||||||||| |||| Sbjct 163299 TCCTTCAATACTATCATCTTTCAT 163322 Score = 120 bits (132), Expect = 4e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | ||||||||||||||| ||||||||| ||| || | | || Sbjct 163449 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 163508 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| |||| | | || ||||| | ||| |||||||| | || || | ||||| Sbjct 163509 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 163567 Query 77112 ACATATGCTGAGGTCGTTCTACA 77134 ||||||||||||||| ||||||| Sbjct 163568 ACATATGCTGAGGTCTTTCTACA 163590 >seq27564 Length=213285 Score = 129 bits (142), Expect = 8e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 93942 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 94001 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| |||||||||||| ||||||||| || || || Sbjct 94002 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 94061 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 94062 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 94121 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 94122 CCTTCAATACTATCATCTTTCATG 94145 Score = 105 bits (116), Expect = 1e-17 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | ||| ||||||||||| || |||||| || ||| | | || | Sbjct 94307 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 94366 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||| | | || || || | ||| ||||| || ||||| || | |||||| Sbjct 94367 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 94425 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171 |||||| || |||| ||||||| ||| | || | ||||| | ||| || | |||| Sbjct 94426 CATATGTTGGGGTCTTTCTACA-ACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 94484 Query 77172 AAGTTTTAAAACCAAAATA 77190 ||||| || |||||||| Sbjct 94485 GGGTTTTGAAGCCAAAATA 94503 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/117 (78%), Gaps = 6/117 (5%) Strand=Plus/Plus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA- 76146 || |||| |||||| || |||||||||||||||||||| |||||||||| | ||| || Sbjct 92551 ATGAATGTATCTGCAAGACCCTGAACTCCAATACCAATGGGTCTATGTCGCAAATTTGAC 92610 Query 76147 --AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 || ||| ||| || |||||| ||||||| ||| || ||||| || |||||| Sbjct 92611 CTTCTTGCAGTTTC---AACAGGGTAGTAATTAACATCAATTATTTTGTTAAGATTT 92664 >seq29811 Length=134906 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | |||| ||||||| |||| | ||| | ||| || | |||||| Sbjct 114315 CCCCCTTGATCAACATATTGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 114256 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || | |||||||||||| || ||||| || | ||||| |||||| ||| || Sbjct 114255 TTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGAG 114196 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 || || |||||||| ||| ||| || | |||||| |||| || ||||| ||| Sbjct 114195 AGACCAATTCCTCCAGCCGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATG 114136 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || || ||||| ||||| | |||||| |||||| Sbjct 114135 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 114094 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| |||||| || | ||| || ||||||||| |||||| |||| ||||||| Sbjct 115086 CTCTTCTTCATACTGGGAATACAAGTTCTCAAATTCAATTCCCCAGGAATCAGCCAAACC 115027 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || | ||| | || || | ||| ||||| | ||||| | | || | || |||||| Sbjct 115026 AGAAGCATCACTAGGGCAAAACAAGGACCATTTTCCATCATTTCTGACTCTTTCCATAAA 114967 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| |||||| ||| ||||| || | | || |||||| Sbjct 114966 GAGATCAGGAACCCAGAGAGCATAAAAGAGATCACGAGCCCGACATTCTTC 114916 >seq26974 Length=240166 Score = 93.3 bits (102), Expect = 6e-14 Identities = 225/341 (66%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || || || ||||| || || || |||||||||| |||| ||||| || || || Sbjct 149180 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTTGAGAAGGTT 149121 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 || || ||||||| || |||||||| | ||||||||| || |||| || || ||| Sbjct 149120 AGTCCCGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 149061 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 ||||||||||| || || || || | |||||||| || | | | | Sbjct 149060 AATATGCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGCCGTCG 149001 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| || | ||||| || |||||||| || || |||| ||||| | || | Sbjct 149000 ATCCAATTTAGGGCCCAGTCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGCGA 148941 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || | | | ||||| || || ||| | || || |||| | || |||||| Sbjct 148940 AATAAGCGGCTCTTTTCGTCGGAATTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATT 148881 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 || || || ||||| || || || || || || ||||| || Sbjct 148880 TCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAA 148840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712642711801920