Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7 158 1e-33 seq1 125 7e-24 >seq7 Length=32205869 Score = 158 bits (174), Expect = 1e-33 Identities = 565/873 (65%), Gaps = 19/873 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| | ||||| ||||| ||||| || || | || || || || Sbjct 30818780 TTTGATATTCCCCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGAAGCGAGATCAGCT 30818839 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||||||||| | | | | || |||||| || | | | | Sbjct 30818840 CCATCCAATCAAAAGGATTCGCCACACCGTACAGCTTCCCGTACCCAAGCGCACCCAACA 30818899 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||||| ||||| ||||| || || | ||| ||||| | ||||| || | | || Sbjct 30818900 ATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCA-AC 30818958 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAA-TAAT 16911 | | ||| || || || || ||| | |||||| | ||||| ||||| | ||| Sbjct 30818959 GCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAAC 30819018 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTA----TGTTTAAGATGTTTAAACATCAGACATG 16967 | || ||| |||||| | | | ||| ||| ||| ||| || | Sbjct 30819019 GCCTTCA-CTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAGGCACG 30819073 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 |||||||||| || | ||||| |||| ||| | ||||| || ||||| || || | Sbjct 30819074 CGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCG 30819133 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| || || || || | ||||||||||||| || ||| || ||||| || | Sbjct 30819134 GCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCC 30819193 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 |||| ||| | |||||||||||||||| || ||| | ||| | || || |||| Sbjct 30819194 CCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGT--CG-ATCC 30819250 Query 17148 ATTTCTGCACCCACTCGGCTT--TTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 | || | ||||| ||||| ||||| | ||| | ||| || ||||| | ||| Sbjct 30819251 AATTTAACGCCCACGTGGCTTTCTTTGC--GACGCAGGGAACCGTCTCGATGGCGTGAAA 30819308 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 | | ||||| | ||| | || || || || | || || ||||||||| Sbjct 30819309 GAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTC 30819368 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTG 17325 |||||| |||||||| ||||| || || || ||||| ||| || || || || | || Sbjct 30819369 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTG 30819428 Query 17326 AACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAA 17385 || ||| ||| | | | || || || ||| |||||||||||| || ||||| Sbjct 30819429 GACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAA 30819488 Query 17386 AAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445 || || | | ||| | | ||| | || ||||| | || || | ||||| Sbjct 30819489 GAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCG 30819548 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 | ||||| || | ||| ||||| || | |||||||| || | || || || || Sbjct 30819549 GAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTA 30819608 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||| | |||||| | ||| || || ||||| Sbjct 30819609 CATTTCCCAAATTTGTGGGTACTGAATCGGGAA 30819641 >seq1 Length=28801852 Score = 125 bits (138), Expect = 7e-24 Identities = 311/467 (67%), Gaps = 5/467 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||||||||| || | ||| || |||| ||| || ||||| || | Sbjct 1183794 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 1183853 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | || ||||| || || || || ||||||||||||||| ||| || | Sbjct 1183854 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCG 1183913 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | |||||||| || || ||| | |||||||| || | || || ||| | ||| | Sbjct 1183914 AGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 1183973 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||| || | |||| ||||| |||| | ||| || |||||| | Sbjct 1183974 CGT--CG-ATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAA 1184030 Query 17196 TGGCCTTAAATAA-TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||| |||||| ||| ||||| | || |||| ||||| || | || || Sbjct 1184031 AGGCGCGAAATAAGCGGCTC-TTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 1184089 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||||||||||||| |||||||| ||||| || || || ||||| ||| || || Sbjct 1184090 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 1184149 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | ||| ||||| ||| | | || || |||||| ||||| || || Sbjct 1184150 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 1184209 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 |||||||| || || | | ||| | ||||| | ||| ||||| Sbjct 1184210 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTC 1184256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517514262613920