Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 2e-11 >seq6 Length=21175815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| ||||||| ||||||| || || || || ||| || | | Sbjct 5316946 AATGCAGATCTTCGTCAAAACCCTGACGGGAAAGACGATCACTCTGGAAGTCGAGAGCTC 5317005 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | | ||| |||||| ||||||||||| | || ||||| Sbjct 5317006 TGACACCATTGACAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATCCCACCTGATCA 5317065 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | || |||||||| || || || ||||| ||| | || | || |||||||| Sbjct 5317066 GCAGCGCCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACGCTTGCGGATTACAA 5317125 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||| || |||||||| ||||||| || Sbjct 5317126 CATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCG 5317161 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| ||||||| ||||||| || || || || ||| || | | Sbjct 5335663 AATGCAGATCTTCGTCAAAACCCTGACGGGAAAGACGATCACTCTGGAAGTCGAGAGCTC 5335722 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | | ||| |||||| ||||||||||| | || ||||| Sbjct 5335723 TGACACCATTGACAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATCCCACCTGATCA 5335782 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | || |||||||| || || || ||||| ||| | || | || |||||||| Sbjct 5335783 GCAGCGCCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACGCTTGCGGATTACAA 5335842 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||| || |||||||| ||||||| || Sbjct 5335843 CATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCG 5335878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428310712648820