Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3654 113 7e-20 seq4 113 7e-20 seq6 100 4e-16 >seq3654 Length=575 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||| || ||| | ||| ||||| | Sbjct 307 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCT 366 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| ||||||||||| || || ||||| ||||| ||||| Sbjct 367 GACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 426 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 427 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 486 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || |||||| | || | || |||||||| Sbjct 487 ATCCAGAAAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTAT 536 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||||||| | ||| ||||| | Sbjct 79 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 138 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || || || || |||||||||||| Sbjct 139 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATCAA 198 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || |||||| | || ||| |||| || | | || || || Sbjct 199 CAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTGCTGACTACAAC 258 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | |||||||| | ||| | || ||||| || Sbjct 259 ATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGCAT 308 >seq4 Length=19951838 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| || | ||| | ||| Sbjct 7828006 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 7827947 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || ||||| || || ||||| || ||||| || || Sbjct 7827946 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 7827887 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||| || |||||| | |||||| | || || | | || ||||| Sbjct 7827886 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 7827827 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | || |||| | ||| || ||||||| || Sbjct 7827826 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTAAGAGGTGGAAT 7827777 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||| || ||| | ||| ||||| | Sbjct 7832648 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCT 7832589 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| ||||||||||| || || ||||| ||||| ||||| Sbjct 7832588 GACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 7832529 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 7832528 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 7832469 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || |||||| | || | || |||||||| Sbjct 7832468 ATCCAGAAAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTAT 7832419 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||| || ||| | ||| ||||| | Sbjct 7861390 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCT 7861331 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| ||||||||||| || || ||||| ||||| ||||| Sbjct 7861330 GACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 7861271 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 7861270 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 7861211 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || |||||| | || | || |||||||| Sbjct 7861210 ATCCAGAAAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTAT 7861161 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| || ||| | ||| | || Sbjct 7827094 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 7827035 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | || || || |||||||| || || || ||||| || || Sbjct 7827034 GACACTATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 7826975 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | || ||| | | || | | |||||| || Sbjct 7826974 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAAC 7826915 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||| || ||||| || |||||||||| || Sbjct 7826914 ATTCAGAAGGAATCCACACTGCATTTGGTGTT 7826883 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||||||| | ||| ||||| | Sbjct 7832876 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 7832817 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || || || || |||||||||||| Sbjct 7832816 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATCAA 7832757 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || |||||| | || ||| |||| || | | || || || Sbjct 7832756 CAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTGCTGACTACAAC 7832697 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | |||||||| | ||| | || ||||| || Sbjct 7832696 ATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGCAT 7832647 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||||||| | ||| ||||| | Sbjct 7861618 ATGCAGATTTTTGTGAAAACCCTGACCGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 7861559 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || || || || |||||||||||| Sbjct 7861558 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGATCAA 7861499 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || |||||| | || ||| |||| || | | || || || Sbjct 7861498 CAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTGCTGACTACAAC 7861439 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | |||||||| | ||| | || ||||| || Sbjct 7861438 ATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGCAT 7861389 >seq6 Length=21175815 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || ||||| || || | ||| | || | Sbjct 5317175 ATGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACCCTGGAGGTGGAGAGTTCT 5317234 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || ||||| ||||| ||||| || ||||||||||| Sbjct 5317235 GATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAG 5317294 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | |||||| | || | |||| |||||||| Sbjct 5317295 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTAATTTAGCTGATTATAAC 5317354 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| || || || | ||| | || | ||| | || |||||| Sbjct 5317355 ATTCAAAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGTGGT 5317402 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || ||||| || || | ||| | || | Sbjct 5335892 ATGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACCCTGGAGGTGGAGAGTTCT 5335951 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || ||||| ||||| ||||| || ||||||||||| Sbjct 5335952 GATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAG 5336011 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | |||||| | || | |||| |||||||| Sbjct 5336012 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTAATTTAGCTGATTATAAC 5336071 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| || || || | ||| | || | ||| | || |||||| Sbjct 5336072 ATTCAAAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGTGGT 5336119 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || || || || ||| | ||| | || || | Sbjct 5265403 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 5265462 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || ||||| || || || || ||||| ||||| Sbjct 5265463 -GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCA 5265521 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||||||||| || || | || || || | || ||||| Sbjct 5265522 ACAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAA 5265581 Query 124718 TATTCAAAAAGAATCAACT 124736 ||| || ||||| |||||| Sbjct 5265582 TATCCAGAAAGAGTCAACT 5265600 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||| || || || || ||| | ||| | || Sbjct 5327692 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCC 5327751 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | || || || ||||| || ||||| || ||||| |||||| Sbjct 5327752 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 5327811 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || ||||||||||| || | || || || | || ||||| Sbjct 5327812 CAAAGATTGATCTTTGCCGGGAAACAATTAGAAGACGGCCGCACGTTGGCTGACTATAAC 5327871 Query 124719 ATTCAAAAAGAATCAACT 124736 || || ||||| |||||| Sbjct 5327872 ATCCAGAAAGAGTCAACT 5327889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755410257139200