Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq6 113 7e-20 seq9 109 8e-19 seq4 87.8 3e-12 >seq6 Length=21175815 Score = 113 bits (124), Expect = 7e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 ||||| || || || || | ||||| || | || || || ||| || || |||||||| Sbjct 13335185 GTTCCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGA-ATGTTATAATC 13335127 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || ||| ||||||| ||| || |||||||| ||||||||||||| ||| |||||||| || Sbjct 13335126 TGCAAGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCGGG 13335067 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||| ||||| || || || Sbjct 13335066 AGGAATGCCTTCCTTGTCCTG 13335046 >seq9 Length=18450785 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || | ||||| || | || || || || || |||||||| Sbjct 18316975 GTTCCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCA 18317034 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | || ||| || |||||||| ||||||||||||||||| |||||||||||| Sbjct 18317035 GCAAGAGTACGGCCATCTTCCAATTGTTTCCCAGCAAAAATCAATCTCTGCTGATCCGGA 18317094 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 18317095 GGAATGCCTTCCTTGTCCTG 18317114 >seq4 Length=19951838 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/229 (66%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||||| || |||||||| | || ||||| || || || ||||||| Sbjct 7826866 TTCCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTG 7826925 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || || | ||| || | || || || ||||||||||| || ||||| || || | Sbjct 7826926 CAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTG 7826985 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| || || |||||||| ||| || ||||| |||| Sbjct 7826986 GAATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATAGTGTCCGAACTCTCTA 7827045 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 | || || ||||||||||| || || | || || | || |||||||| Sbjct 7827046 CCTCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 7827094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743481379476480