Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq8 87.8 1e-12 >seq8 Length=22711823 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 20428 TGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGAT 20487 || || || || || |||||| || || || |||||||||||||| || || |||||| Sbjct 5299446 TGGCAGTTCTATGTGGCTAATGGGGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGAT 5299387 Query 20488 ATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCA 20547 ||||| |||||||| || || || ||||| ||||| || | || | |||||||| Sbjct 5299386 ATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATATGCCCTCTTGACATGCATGATTGCT 5299327 Query 20548 CATGTT 20553 |||||| Sbjct 5299326 CATGTT 5299321 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 20428 TGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGAT 20487 || || || || || |||||| || || || |||||||||||||| || || |||||| Sbjct 5317764 TGGCAGTTCTATGTGGCTAATGGGGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGAT 5317705 Query 20488 ATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCA 20547 ||||| |||||||| || || || ||||| ||||| || | || | |||||||| Sbjct 5317704 ATGGGCCTGGGTGTGCCGTTTAACATTGCTTCATATGCCCTCTTGACATGCATGATTGCT 5317645 Query 20548 CATGTT 20553 |||||| Sbjct 5317644 CATGTT 5317639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399160433673580