Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 9e-15 seq9 91.5 1e-13 seq4 89.7 4e-13 >seq6 Length=21175815 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || |||| |||||| || || || ||||||||||| || || || Sbjct 13335183 TCCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTGC 13335124 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||||||||||||||| || ||| | || ||||| || ||||| || Sbjct 13335123 AAGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCGGGAGG 13335064 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 13335063 AATGCCTTCCTTGTC 13335049 >seq9 Length=18450785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || |||| |||||||||||| || || |||||||| || || || Sbjct 18316977 TCCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCAGC 18317036 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | ||||||||||||||| || ||| | || | ||| || |||||| || Sbjct 18317037 AAGAGTACGGCCATCTTCCAATTGTTTCCCAGCAAAAATCAATCTCTGCTGATCCGGAGG 18317096 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 18317097 AATGCCTTCCTTGTC 18317111 >seq4 Length=19951838 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| |||||||| || || ||||||||||| || | ||| | ||| Sbjct 7832893 AGGACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCC 7832952 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||||||| ||| | || || ||||| || || || | ||||||||||| Sbjct 7832953 TCAAGTTGTTTGCCAGCAAATATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCC 7833012 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGC-TCGGTTTCAATGGTGATGC 18291 ||||| | || ||||| | ||| |||| ||| || || |||| ||| ||| Sbjct 7833013 TGAATTT-TGGCTTTGACATTGTCAATGGTGT--CCGAGCTTCCACCTCAAGGGTAATGG 7833069 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || | || |||||||| |||||||| Sbjct 7833070 TCTTTCCAGTGAGGGTCTTTACAAAGATTTGCAT 7833103 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| |||||| || || || || ||||| ||||||||||| Sbjct 7827324 CCTCCACGAAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCG 7827383 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | || || || ||| ||||||| || || || || || Sbjct 7827384 AGGGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGG 7827443 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| | | |||| | | || ||| ||| || ||| Sbjct 7827444 ATGCCTTCCTTGTCTTGAATCT-TAGCTTTAACATTGTCAATAGTATCCGAACTCTCAAC 7827502 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||| ||| | ||||| || | || || ||||| |||||||| Sbjct 7827503 TTCTAAGGTAATGGTCTTGCCAGTAAGAGTCTTAACAAAGATTTGCAT 7827550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379321604952780