Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7 163 4e-35 seq1 150 2e-31 >seq7 Length=32205869 Score = 163 bits (180), Expect = 4e-35 Identities = 408/616 (66%), Gaps = 8/616 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || || |||||||||||||| |||||||| |||| || || ||||| || | Sbjct 30819062 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 30819121 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 | || | ||| ||||||| || |||||||| ||||||||||| | || || | || Sbjct 30819122 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 30819180 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 33749 || ||||| || || || || |||||| || || | |||||| | || | | | Sbjct 30819181 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 30819240 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| ||| ||||| ||| |||||| || || || | ||| || Sbjct 30819241 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 30819297 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 ||||| | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 30819298 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 30819357 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||||||| || || ||||| || ||||| || || || |||||||| | |||| Sbjct 30819358 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCC 30819417 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| | ||| || || || || | | | || | || || || || || || Sbjct 30819418 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 30819477 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 |||||| || || || | || || | | || | || ||||| | ||||| Sbjct 30819478 GAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 30819537 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 30819538 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCG 30819597 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTT 34169 || || || ||||| | ||| || | | || || || ||||| || ||||| || Sbjct 30819598 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCG 30819657 Query 34170 GGATTTGGTGCAAGGA 34185 |||||||| || |||| Sbjct 30819658 GGATTTGGGGCTAGGA 30819673 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 11158331 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11158272 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 11158271 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 11158213 Query 63781 ACATGTGCTGAGGTCTTTCAACAA 63804 |||| |||||||||||||| |||| Sbjct 11158212 ACATATGCTGAGGTCTTTCTACAA 11158189 >seq1 Length=28801852 Score = 150 bits (166), Expect = 2e-31 Identities = 389/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 1183794 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 1183853 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || || ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 1183854 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCG 1183913 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 33749 | ||||| || ||||| || ||| ||||| || || |||||||| | || | | | | Sbjct 1183914 AGAAGAATATCCCTTCCAC-GCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 1183972 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| ||| | |||||||||||||| || || || |||| |||||| Sbjct 1183973 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 1184029 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 | ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 1184030 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 1184089 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 1184090 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 1184149 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| | || |||||| | || | | || | ||||| || |||||||| Sbjct 1184150 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 1184209 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 1184210 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 1184269 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 1184270 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 1184329 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || || || ||||| | |||||| || | || |||||||| || || Sbjct 1184330 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 1184376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629779464544320