Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 seq9 89.7 5e-13 seq1 87.8 2e-12 >seq7 Length=32205869 Score = 107 bits (118), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| ||||| || || || |||||||||| || | |||||||| ||||||||| Sbjct 30819070 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 30819129 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| || || || ||||| | ||||||||| || ||| ||| || ||||| Sbjct 30819130 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 30819189 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 || ||||| || ||||||||| ||||||| ||||| Sbjct 30819190 ATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 30819225 >seq9 Length=18450785 Score = 89.7 bits (98), Expect = 5e-13 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| ||||| |||||||||||| ||||| |||||||| || || || Sbjct 3573514 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 3573455 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||||| ||| | ||||| | ||| ||||| ||| |||| Sbjct 3573454 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA-CAAA 3573412 >seq1 Length=28801852 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/164 (74%), Gaps = 8/164 (5%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 1183799 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 1183858 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATAT--TGCAGCAAATGACCCGGAAA 13986 | || ||||| || || || ||||| ||||||||||| |||| || || || || | Sbjct 1183859 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTG--CCCGAGA 1183916 Query 13987 AGAATATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCC 14029 ||||||| || || || ||| ||||||||||| | || ||||| Sbjct 1183917 AGAATATCCCTTCCAC-GCAGGCAAACGCTATCAGTC--TCTCC 1183957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479698952469600