Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 3e-15 seq9 89.7 5e-13 seq1 89.7 5e-13 >seq7 Length=32205869 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 ||||| ||||| || || || |||||||||| || | |||||||| ||||||||| Sbjct 30819070 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 30819129 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAA 13778 || ||||| || || || ||||| | ||||||||| || || || | || || ||||| Sbjct 30819130 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAAAAACTCCCTGAGAAGAA 30819188 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCC 13817 || ||||| || ||||||||| |||| || ||||| Sbjct 30819189 AATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 30819225 >seq9 Length=18450785 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| ||||| |||||||||||| ||||| |||||||| || || || Sbjct 3573514 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 3573455 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||| ||| | ||||| | ||| ||||| ||| Sbjct 3573454 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA 3573416 >seq1 Length=28801852 Score = 89.7 bits (98), Expect = 5e-13 Identities = 119/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 1183799 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 1183858 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 | || ||||| || || || ||||| ||||||||||| || ||| || || ||| Sbjct 1183859 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 1183918 Query 13777 AATATTCCCTCAACTGCA-GCAAACGCTATTAGTCGTTCTCC 13817 ||||| || || || ||| ||||||||||| |||| ||||| Sbjct 1183919 AATATCCCTTCCAC-GCAGGCAAACGCTATCAGTC--TCTCC 1183957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478559821448160