Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 116 5e-21 >seq7 Length=32205869 Score = 116 bits (128), Expect = 5e-21 Identities = 374/564 (66%), Gaps = 26/564 (5%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 ||||||||||||||||| || || | || || |||||||| | || || || ||||| Sbjct 30819620 ATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATCTT 30819561 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 || | || || | | |||||| | | | || | |||| ||||| || | Sbjct 30819560 TCGCAAGATCTCCGCCACTGGGAGGCCC---TAACCG---CTGA-CGAGAAGCACTTCGT 30819508 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 ||||| | | |||||||| || | |||||| || |||||| ||| || || Sbjct 30819507 CACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGG 30819448 Query 125195 ACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAAT 125251 | | ||| ||| | ||| || | |||| ||| || || ||||| |||||||| Sbjct 30819447 AAGGTTCATGACGGAGGT--CCAGGTCGCCGAGGC-TCGCGCCTTCTACGGCTTCCAAAT 30819391 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 | || |||||| | ||||| ||||||||||| || | || | ||||| || Sbjct 30819390 CGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGA 30819331 Query 125312 -TCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 |||| ||| ||| | | |||||| |||| ||||| ||||| || | | || ||| Sbjct 30819330 CTCCG--ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGT-CGCAAA 30819274 Query 125370 -AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428 || || |||| | | |||||||| | | || ||| ||| || ||| | Sbjct 30819273 GAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTT---CGCGGAGAGATT 30819217 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 | || || || ||| ||||| || ||||| || || |||||| || || ||||| Sbjct 30819216 AATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTG 30819157 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||| |||||||| | ||||| ||| | || | |||||||| || || ||||| Sbjct 30819156 GCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTGATCTCGCGAGA 30819097 Query 125549 CGAGGGCCTACACTGTGACTTTGC 125572 ||||| || ||||| || || || Sbjct 30819096 TGAGGGTCTCCACTGCGATTTCGC 30819073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741014328865440