Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq4 98.7 7e-16 >seq6 Length=21175815 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| |||| | | ||| | ||||||||| || || || || ||||| ||||| Sbjct 5235053 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCA 5234994 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || | || || | |||||||||||| | |||||||| || || || |||| Sbjct 5234993 AGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGA 5234934 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| ||| ||| | || || || || | || || Sbjct 5234933 ATTCCTTCCTTGTCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACT 5234874 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| ||||| || || || || || ||||| || ||||| Sbjct 5234873 TCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 5234827 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| |||| | ||||| | |||||| || || || || || ||||||||||| Sbjct 4449567 TGCCACCCCTCAGACGCAAAACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG 4449626 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || | || || | || ||||||||| | |||||||| || ||||| | Sbjct 4449627 CGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCG 4449686 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| ||| || | || || || ||| | || | Sbjct 4449687 GAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCGA 4449746 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | |||||| || || || || || ||||| || || || ||||| Sbjct 4449747 CTTCGAGGGTAATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 4449795 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || ||||||||||| ||| | | | |||| || | || Sbjct 4449364 ATGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTACGCCCGTCCTCAAGCTG 4449423 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | || | | || || || ||| || ||||| ||||| ||| || Sbjct 4449424 CTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTT 4449483 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || |||||||| | | ||||| || | |||||| || || || || Sbjct 4449484 GGCTTTGACATTGTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCGTCTTCCCGGT 4449543 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 4449544 CAATGTCTTAACAAAAATCTGCAT 4449567 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || ||||| ||||| ||||| || | | |||| |||| || Sbjct 5328123 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 5328064 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | || | | || || || |||||| ||||| ||||| ||| || Sbjct 5328063 CTTCCCAGCGAAAATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 5328004 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| | || || ||||| | | || || || | ||||| || || || | Sbjct 5328003 TGC-CTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAG 5327945 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| ||| || |||||||||||||| Sbjct 5327944 TCAAAGTCTTGACAAAAATTTGCAT 5327920 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| | |||||| |||||||| |||||||||||| | | | ||||||| | ||| Sbjct 5265378 ATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCGAGTTG 5265319 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | |||| | || |||||| || ||||| || ||||| || || Sbjct 5265318 CTTTCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTT 5265259 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || || || ||| | || || || | |||||| || || || || Sbjct 5265258 GGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGT 5265199 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| ||||| || || || ||||| Sbjct 5265198 CAGGGTTTTGACGAAGATCTGCAT 5265175 >seq4 Length=19951838 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| || || | | | || || Sbjct 7832896 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 7832955 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| |||| | | ||| ||||| ||| || ||||| || || | Sbjct 7832956 AGTTGTTTGCCAGCAAATATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 7833015 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| | || ||||| || | | ||| || || | ||||||||| || Sbjct 7833016 ATTTTGGCTTTGACATTGTCAATGGTGTC-CGAGCTTCCACCTCAAGGGTAATGGTCTTT 7833074 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || |||||||| |||||||| Sbjct 7833075 CCAGTGAGGGTCTTTACAAAGATTTGCAT 7833103 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || || || ||||| ||||| || | || | ||||| Sbjct 7827113 AACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGCAAGGGTCCTACCATCTTC 7827172 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || |||||||| | ||||| | || |||||| ||||| || || || || Sbjct 7827173 AAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTG 7827232 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | |||||||| || | |||| || || || || ||||| || Sbjct 7827233 GATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTCCACCTCCAAAGTGATGGTCTT 7827292 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || ||||| || |||||| Sbjct 7827293 CCCAGTCAAAGTCTTCACAAAGATCTGCATA 7827323 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | || ||| || || ||||| || ||||| || || || ||||||||||| Sbjct 7826868 CCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTGCA 7826927 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| | ||||| | || ||||| || | ||||| | || ||||| |||| Sbjct 7826928 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGA 7826987 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || || ||| ||| ||| | || || || || | | ||||| Sbjct 7826988 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATAGTGTCCGAACTCTCTACC 7827047 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || ||||| || || ||||| || |||||||||||||| Sbjct 7827048 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 7827094 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||||| || || || || ||||| ||| || | || | ||||| Sbjct 7827342 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 7827401 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | || | | || ||||| || || ||||| ||||| | Sbjct 7827402 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 7827461 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || ||| | || || ||||| | | || || |||||||||||||| || Sbjct 7827462 ATCTTAGCT-TTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTT 7827520 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || ||||| ||||||||| Sbjct 7827521 GCCAGTAAGAGTCTTAACAAAGATTTGCATA 7827551 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| || || | | | || ||| Sbjct 7861638 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 7861697 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| ||||| | || | | ||| ||||| ||| || ||||| || || | Sbjct 7861698 AGTTGTTTACCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 7861757 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| | || ||||| ||| |||| || || | ||| || || || Sbjct 7861758 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCTTT 7861817 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||| || |||||| Sbjct 7861818 CCAGTGAGGGTCTTTACAAAGATCTGCATA 7861847 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || ||||| || || ||| | | | || || Sbjct 7828026 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCCTCG 7828085 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | || | | ||| ||||| ||| || ||||| || || Sbjct 7828086 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 7828145 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||||| | || ||||| || |||| || || | ||| ||||| || Sbjct 7828146 ATCTTGGCTTTTACATTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 7828205 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| |||||||| Sbjct 7828206 CCGGTGAGAGTCTTCACAAAGATTTGCAT 7828234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362157818298204