Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 seq4 93.3 4e-14 >seq6 Length=21175815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | ||| | |||| ||| | ||| |||||||||||||| || ||||| | Sbjct 13335184 TTCCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTG 13335125 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| || | || |||| |||||||| ||| |||| |||||||||||||| | Sbjct 13335124 CAAGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCGGGAG 13335065 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||| || ||||| Sbjct 13335064 GAATGCCTTCCTTGTC 13335049 >seq4 Length=19951838 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| ||||||||||| || || | || | | || || Sbjct 7827342 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 7827401 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| | ||||| |||||||| || || | ||| || ||||| | Sbjct 7827402 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 7827461 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | | | | |||||| | ||| ||| | ||||||||| || Sbjct 7827462 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 7827521 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || ||||| |||||||| Sbjct 7827522 CCAGTAAGAGTCTTAACAAAGATTTGCAT 7827550 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||| ||||| ||||| ||||| || || | || | | || || Sbjct 7827569 CACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCTTC 7827628 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| |||| |||||||||||||| || | ||||| ||||| Sbjct 7827629 TAGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTG 7827688 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | | ||| ||||| | ||| ||| | ||| || ||||| Sbjct 7827689 AATCTTAGCCTTGACATTGTCGATTGTATCAGAACTCTCAACTTCCAAGGTGATAGTTTT 7827748 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| || | ||||| ||||| || |||||| Sbjct 7827749 ACCAGTCAGGGTTTTCACAAATATCTGCATT 7827779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414548325176536