Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 seq6 93.3 4e-14 seq3 91.5 1e-13 seq4 89.7 4e-13 >seq2 Length=30838379 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| |||| ||| ||||||| |||||||| ||| || | Sbjct 853290 CTCCTTCTGGATGTTGTAATCCACCAAGGTGCGCCCGTCCTCAAGCTGCTTTCCGGCGAA 853349 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | |||||||||| || || || || | Sbjct 853350 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTCGACATT 853409 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || ||| |||| ||||| || ||||| || ||||| | ||||||||| Sbjct 853410 GTCGATCGTGTCGAAGCTCTCCACCTCGAGAGTAATGGTCTTGCCGGTCAAAGTTTTCAC 853469 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 853470 AAAGATCTGCATC 853482 >seq6 Length=21175815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| ||||||||||||||||||| ||| ||||||| ||||| Sbjct 4449364 ATGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTACGCCCGTCCTCAAGCTG 4449423 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | | ||||||||| || | | |||||||||| ||| || Sbjct 4449424 CTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTT 4449483 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||| | | |||||||| | | ||| ||| | || || || || ||||| Sbjct 4449484 GGCTTTGACATTGTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCGTCTTCCCGGT 4449543 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || || |||||||||||||| Sbjct 4449544 CAATGTCTTAACAAAAATCTGCAT 4449567 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||||||||||||||| |||||||| || | || | ||||| ||||| Sbjct 5317378 ATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAAATTACGGCCATCCTCAAGCTG 5317319 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | | |||||| ||| ||| || Sbjct 5317318 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 5317259 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | | |||| ||| | || || ||||| || || Sbjct 5317258 AGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAGGGTAATTGTTTTCCCAGT 5317199 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||| Sbjct 5317198 AAGAGTCTTGACGAAAATCTGCAT 5317175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || ||||||||||||||||| ||||| || |||| || || ||||| ||| | | Sbjct 5335626 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAG 5335567 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | ||||||||| ||| ||| | | ||||||||| || || ||||| | | Sbjct 5335566 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 5335507 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || || || |||| |||| |||| || || || || |||||||| ||||||| Sbjct 5335506 TCG--ATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCA 5335449 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 5335448 CAAATATCTGCATC 5335435 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||||||||||||||| |||||||| || | || | ||||| ||||| Sbjct 5336095 ATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAAATTACGGCCATCCTCAAGCTG 5336036 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | | |||||| ||| ||| || Sbjct 5336035 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 5335976 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | | |||| ||| | || || ||||| || || Sbjct 5335975 AGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAGGGTAATTGTTTTCCCAGT 5335916 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||| Sbjct 5335915 AAGAGTCTTGACGAAAATCTGCAT 5335892 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || ||||||||||||||||| ||||| || |||| || || ||||| ||| | | Sbjct 5316909 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAG 5316850 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | ||||||||| ||| ||| | | ||||||||| || || ||||| | | Sbjct 5316849 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 5316790 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || || || || | |||| |||| || || ||||| ||||| || ||||||| Sbjct 5316789 TCG--ATTGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCA 5316732 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 5316731 CGAAGATCTGCAT 5316719 >seq3 Length=28715784 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||| | ||||| ||| ||||||| |||||||| ||| || | Sbjct 25365224 CTCCTTCTGGATGTTGTAAACCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 25365283 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| || || | | |||||||||| || || ||||| | Sbjct 25365284 GATCAGCCGCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 25365343 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || | |||| |||| ||||| || ||||| || ||| | | ||||||||| Sbjct 25365344 GTCGATCATGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGATCAAAGTTTTCAC 25365403 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 25365404 AAAGATCTGCATC 25365416 >seq4 Length=19951838 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || ||||| |||||||| ||| | |||||||||||||| ||| | | Sbjct 7826675 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAA 7826734 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | ||||||||| || | | |||||||||| ||||| ||| | | Sbjct 7826735 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 7826794 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | | ||| ||| | || |||||||| || || | || ||||| Sbjct 7826795 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTAATGGTTTTTCCCGTCAATGTCTTCAC 7826854 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 7826855 GAAAATCTGCAT 7826866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421226330908844