Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7 113 2e-20 seq6 111 8e-20 seq5 111 8e-20 seq1 111 8e-20 seq8 109 3e-19 seq2 109 3e-19 seq37 100 1e-16 >seq7 Length=32205869 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 7761506 AAAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 7761565 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 7761566 TCTAACCAACTGAGCTAATAGGCC 7761589 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 30727818 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 30727877 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 30727878 TGAGCTAATAGGCC 30727891 >seq6 Length=21175815 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 11801821 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 11801762 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 11801761 CTGAGCTAATGGGCC 11801747 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| | ||||||||| | | |||||||| ||||||||||||||||||||| || Sbjct 10867756 AAAAAACAACACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAAC 10867697 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 10867696 GCTCTAACCAGCTGAGCTAATAGGCC 10867671 >seq5 Length=36147563 Score = 111 bits (122), Expect = 8e-20 Identities = 88/106 (83%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 11427 GGAAATATAGAATTAATAAAAAATCAA---ATTGGCCCATGAAAGGATCGAACCTTCGAC 11483 ||||| | |||| | ||||||| | ||||||||||| | | |||||||| |||| Sbjct 30660224 GGAAAAACGGAATGGAAAAAAAATATATATATTGGCCCATGCAGGTCTCGAACCTGCGAC 30660165 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 30660164 CTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 30660119 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 7671518 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 7671459 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 7671458 AACTGAGCTAATAGGCC 7671442 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||| ||| ||||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 35075127 AAACAATAAAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 35075186 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 35075187 ACGCTCTAACCAACTGAGCTAATAGGCC 35075214 >seq1 Length=28801852 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||||||| || |||||||| | | |||||||| |||||||||||||||||||| Sbjct 27959594 AAAAAAAAATCATTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 27959653 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 27959654 CGACGCTCTAACCAACTGAGCTAATAGGCC 27959683 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 18998291 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18998232 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 18998231 TGAGCTAATAGGCCGT 18998216 Score = 96.9 bits (106), Expect = 2e-15 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||| |||| |||||||||| | |||||||| |||||||| ||||||||| Sbjct 23039694 ATTAATAATT--TCAACTTGGCCCATGCAGTTCTCGAACCTGCGACCTTCACGTTATTAG 23039637 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||| ||||||||||| ||| ||| || Sbjct 23039636 CACGACGCTCTAACCAACTGAGCAAATAGGCAGT 23039603 >seq8 Length=22711823 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 19773405 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 19773464 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 19773465 CAACTGAGCTAATAGGCCG 19773483 >seq2 Length=30838379 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 16751850 AAAAATTGATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 16751791 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 16751790 GCTCTAACCAACTGAGCTAATAGGCCG 16751764 >seq37 Length=800255 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 376790 TGGCCCATGTAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 376731 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 376730 TGAGCTAATAGGCC 376717 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261475762540144