Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 158 2e-34 seq8 143 4e-30 seq6 95.1 2e-15 >seq4 Length=19951838 Score = 158 bits (174), Expect = 2e-34 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| |||||||| || ||||| | ||||| |||||| Sbjct 1775221 GATAACATTCAGGGGATCACAAAGCCGGCTATCCGGCGGCTGGCGAGGCGTGGCGGAGTC 1775280 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || | || || |||| ||| | |||||||||||||| | || Sbjct 1775281 AAGCGTATCAGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTGAAGATCTTTTTGGAG 1775340 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | || || ||||||||| ||||||||||||||| || Sbjct 1775341 AACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGACTGTCACCGCC 1775400 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| ||||| | || ||| | | |||| ||||| || ||||| Sbjct 1775401 ATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACCCTTTACGGTTTCGGTGGTTAA 1775460 >seq8 Length=22711823 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| |||||||| || |||||||| ||||| || ||| Sbjct 20501593 GCAAAGCGTCACCGTAAGGTTCTTCGCGATAACATTCAGGGAATCACAAAGCCCGCAATC 20501652 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||||||||| ||||| || |||||| || ||| ||| |||| || |||| Sbjct 20501653 CGGCGTCTGGCTCGTCGGGGTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACA 20501712 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||||||| | ||| ||| |||| || || | || || ||| Sbjct 20501713 CGTGGCGTTCTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGAG 20501772 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| | |||||||| || | ||||| |||| || || | || | || ||| Sbjct 20501773 CACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCAAGAGGCAGGGC 20501832 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| ||||| ||||| Sbjct 20501833 AGGACTCTCTATGGGTTTGGTGGTTAA 20501859 Score = 143 bits (158), Expect = 4e-30 Identities = 193/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||||| |||||||| || || ||||| ||||| || || Sbjct 20810903 CGCCAAGCGTCACCGTAAGGTGCTTCGCGATAACATTCAGGGTATCACAAAGCCGGCAAT 20810844 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||| | ||||||||||||||| || || ||| |||| || |||| Sbjct 20810843 CCGGCGTTTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGAC 20810784 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||| ||| | ||| ||| |||| ||| || | ||| || || Sbjct 20810783 ACGTGGCGTCCTGAAGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGA 20810724 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | ||||| || ||| | ||||| |||| || || | || | || || Sbjct 20810723 GCACGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG 20810664 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||||| ||||| |||||| Sbjct 20810663 CAGGACTCTTTATGGATTTGGGGGTTAAT 20810635 >seq6 Length=21175815 Score = 95.1 bits (104), Expect = 2e-15 Identities = 184/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || |||||||| || || ||||||||||| ||||| Sbjct 7467387 GCCAAGAGGCATCGCA-AGGTGTTGCGTGATAACATTCAGGGCATCACCAAGCCGGCTAT 7467445 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| | | || || || ||| | || || | |||| || |||| Sbjct 7467446 TCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCGGTCTCATCTACGAGGAGAC 7467505 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||| | ||| ||| || | |||||| | ||| || || Sbjct 7467506 ACGCGGCGTCCTCAAGATCTTTTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGA 7467565 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || ||| |||||||| |||| ||||| | || | || || Sbjct 7467566 GCACGCTCGCCGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGG 7467625 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | | ||||| ||||| ||| || Sbjct 7467626 CAGGACTCTCTATGGGTTTGGTGGTTGAT 7467654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070771096892