Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq4844 590 2e-164 seq2 307 3e-79 seq20 123 7e-24 >seq4844 Length=160129 Score = 590 bits (654), Expect = 2e-164 Identities = 728/987 (74%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||||||||| | ||||||||||| || | Sbjct 1523 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1464 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| ||||||| || || || || Sbjct 1463 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 1404 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| || || || ||||| || ||||| || || || | || ||||||||| Sbjct 1403 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1344 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | || || ||||| |||| ||||| ||||| Sbjct 1343 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 1284 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||| ||||||||||| |||||||| ||| | || |||| Sbjct 1283 TGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1225 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 1224 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1165 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | ||||||| ||| Sbjct 1164 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1105 Query 19709 TGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | | |||||| | || ||||| |||||| ||||||||||||||| || | Sbjct 1104 TGT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1046 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||| || || ||| | |||||||| || || ||||| ||||||||||| | Sbjct 1045 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 986 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | ||||||||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 985 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 926 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | ||||| || || | |||| |||||| || || ||| ||| || | Sbjct 925 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 866 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | ||||| ||||| ||||| || |||||||| || ||||| ||||| || |||| Sbjct 865 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 806 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| |||||| ||||||||||||||||||||||| || | Sbjct 805 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 746 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | || | | || || ||||||||||||||| Sbjct 745 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 686 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 || | |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 685 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAAT 627 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | ||| | |||||||| || | ||||||||||| || || ||| Sbjct 626 ACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 567 Query 20247 GCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||||||||| || || ||||| Sbjct 566 GCTCATAACTTCCCTCTAGACCTAGCT 540 >seq2 Length=30838379 Score = 307 bits (340), Expect = 3e-79 Identities = 414/571 (73%), Gaps = 4/571 (1%) Strand=Plus/Minus Query 19302 GTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGC 19361 || || || || || ||||||||||| | ||||||||||| || | ||||| ||| Sbjct 6214855 GTAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACT 6214796 Query 19362 TTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATA 19421 ||| | | || ||| || ||||| ||||||| || | || || || |||||||| Sbjct 6214795 TTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATATT 6214736 Query 19422 GATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGA 19481 || || || ||||| | ||||| | || || | || |||||||||||||||||||| Sbjct 6214735 GACGGTATTCGTGAACTTGTTTCTGAATCTCTACTTTATGGAAACAATATTATTTCTGGT 6214676 Query 19482 GCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGC 19541 || | |||| | || || ||||| |||| ||||| ||||| |||||||| ||| Sbjct 6214675 GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC-GGC 6214617 Query 19542 A-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTT 19600 | | | ||||| ||||||||||| |||||||| ||| | || |||| | |||||||| Sbjct 6214616 ATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTT 6214557 Query 19601 AATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAG 19660 | | || ||||| ||| ||| | |||||||||| || | | | || ||| Sbjct 6214556 ACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATGCA 6214497 Query 19661 ACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGT 19720 || ||||| | || |||||| |||| | | ||||||| | |||| ||||| | Sbjct 6214496 TCCTTGGATTGTTGTTGCATATTCAGCTCTTGTTGCAGCAGCGACTACTGT-TTTCTTGA 6214438 Query 19721 T-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTT 19779 | |||||| |||| ||||| |||||| ||||||||||||||| || ||||||||||||| Sbjct 6214437 TCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTT 6214378 Query 19780 TTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGC 19839 | ||||| ||| | ||||| | || || ||||| ||||||||||| || ||||||||| Sbjct 6214377 TCAACTTCATGATTGTATTATAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGT 6214318 Query 19840 TCGGTGTTGCTGGCGTATTCGGTGGATCTCT 19870 | || | ||| | ||||| || || || || Sbjct 6214317 TAGGCATAGCTTGTGTATTTGGCGGCTCCCT 6214287 >seq20 Length=1106287 Score = 123 bits (136), Expect = 7e-24 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 20113 GCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAAC 20171 ||||||||||||||||| | |||||||| || || ||||| || ||||||||| ||||| Sbjct 251017 GCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAG 250958 Query 20172 GGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTT 20231 | | |||| || ||||||||| | | ||| | |||||||| || | |||||| Sbjct 250957 GTCGTG-TAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTT 250899 Query 20232 ATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 ||||| || || ||||||||||||||||| || || ||||| Sbjct 250898 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 250857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144433291358064