Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq4844 515 6e-141 seq2 260 2e-64 seq20 140 5e-28 >seq4844 Length=160129 Score = 515 bits (570), Expect = 6e-141 Identities = 680/943 (72%), Gaps = 0/943 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 ||||||||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 1483 TTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 1424 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || ||||| || || ||||| || ||||| ||||| || |||||||| || |||| | Sbjct 1423 TCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGAT 1364 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | ||||| ||||| || || |||||||| || |||| |||| || || | Sbjct 1363 CTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAG 1304 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| || || || || || |||||||| ||| | ||||||| ||| | |||||||| | Sbjct 1303 GTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCG 1244 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| || | | | | |||||| | | || | | |||||||| | Sbjct 1243 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 1184 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| | Sbjct 1183 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 1124 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 |||| ||||||| ||||| ||| | | |||||| ||||||| || || || | Sbjct 1123 CTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTG 1064 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | ||||||||| |||| || || || || ||||| |||||| | |||||||| || || | Sbjct 1063 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGC 1004 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCAT 212149 | ||||||||||||||||||||||| ||| ||| || || ||| | ||||| || | Sbjct 1003 ACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 944 Query 212150 TATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTT 212209 ||||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 943 TATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAA 884 Query 212210 TAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTG 212269 || || || ||||||| ||||| ||||| ||||| || ||||| ||||| | Sbjct 883 ATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAG 824 Query 212270 CTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAA 212329 |||| || || || || || || | |||||||| ||||| |||||||| | Sbjct 823 CTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTT 764 Query 212330 GTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTA 212389 |||||| |||||||| || | |||||||| | || | ||||| || || | |||| Sbjct 763 CTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTA 704 Query 212390 TCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCAT 212449 | |||| ||||| |||||| ||||||| ||||| ||||||||||| || |||||| Sbjct 703 TTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 644 Query 212450 CAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 212509 |||| || || ||| |||| |||| || |||| | || |||||||||||||||| Sbjct 643 AAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAG 584 Query 212510 TTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||| ||| | ||||| || |||||||| || ||| |||| Sbjct 583 TTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 541 >seq2 Length=30838379 Score = 260 bits (288), Expect = 2e-64 Identities = 363/509 (71%), Gaps = 0/509 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 ||||||||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 6214827 TTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 6214768 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || ||||| | || ||||| || ||||| ||||| || ||||||| || ||| | Sbjct 6214767 TCGCCTTCATTGTTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACTTGTTTCTGAAT 6214708 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | ||||| ||||| || || |||||||| || |||| |||| || || | Sbjct 6214707 CTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAG 6214648 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| || || || || || |||||||| ||| | ||||||| ||| | |||||||| | Sbjct 6214647 GTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCG 6214588 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| || | | | | |||||| | | || | | |||||||| | Sbjct 6214587 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 6214528 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | |||| | ||||||| ||||||||| |||||| |||||||| | Sbjct 6214527 AGTGGGAACTTAGTTTCCGTATGGGTATGCATCCTTGGATTGTTGTTGCATATTCAGCTC 6214468 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 ||| ||||||| |||| ||| | | |||||| | ||||| || || || | Sbjct 6214467 TTGTTGCAGCAGCGACTACTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTG 6214408 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | ||||||||| |||| || || || || |||||||||||| | ||||| | || || | Sbjct 6214407 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTATAGGCTGAGC 6214348 Query 212090 ATAACATCCTTATGCACCCATTCCATATG 212118 | ||||||||||||||||||||||| ||| Sbjct 6214347 ACAACATCCTTATGCACCCATTCCACATG 6214319 >seq20 Length=1106287 Score = 140 bits (154), Expect = 5e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 212371 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAAC 212430 ||||| || || | ||||| |||| ||||| |||||| ||||||| ||||| |||||| Sbjct 251039 TGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAAC 250980 Query 212431 CAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGA 212490 ||||| || |||||| |||| || || ||| |||| |||| || |||| | Sbjct 250979 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGT 250920 Query 212491 GCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTA 212550 || ||||||||||||||||||||||| ||| | ||||| || |||||||| || ||| || Sbjct 250919 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 250860 Query 212551 GC 212552 || Sbjct 250859 GC 250858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807506302532640