Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq4844 538 4e-148 seq2 262 4e-65 seq3 150 2e-31 seq20 109 6e-19 >seq4844 Length=160129 Score = 538 bits (596), Expect = 4e-148 Identities = 713/987 (72%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || ||| | ||| |||||||||||||||| || Sbjct 1523 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1464 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| | | | || || || || || ||| | || ||||| ||||||||| Sbjct 1463 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 1404 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| ||||| ||||| || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 1403 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1344 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 1343 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 1284 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || | | || || ||||| ||||| || |||||||| || || || || Sbjct 1283 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 1224 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | |||||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 1223 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1164 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 || || ||| | |||||||| ||| ||||| ||||| ||||| | ||||| ||| Sbjct 1163 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCT 1104 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 || ||| | | || ||| ||||||| || || |||||||||||||| ||||| ||| Sbjct 1103 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1044 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 || ||||| ||||| |||||| | || ||||| || || |||||||| || |||||||| Sbjct 1043 TCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 984 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 171265 ||||| ||| ||| ||||| ||| | ||||| || || |||||||| ||||| ||| Sbjct 983 TTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 924 Query 171266 TCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGC 171325 || | || || ||| | | ||||| || || || || || || | || || Sbjct 923 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGT 864 Query 171326 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 171385 || | ||||| ||||| |||||||| ||||| || || |||||||| || || || || Sbjct 863 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGC 804 Query 171386 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 171445 |||| |||||||| ||||| |||||||| |||||||| ||||| |||||||| ||| Sbjct 803 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCT 744 Query 171446 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 171505 | | |||||||| || | ||||| || || | ||||| | || ||||| |||||| Sbjct 743 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 684 Query 171506 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACC 171561 | || || ||||| ||||||||||| || || ||| ||| || | | |||| Sbjct 683 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 624 Query 171562 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 171621 |||| ||| || |||| | || |||||||| |||||||||||||||||| | || Sbjct 623 ----TGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 568 Query 171622 TGCACACAACTTCCCACTAGACCTAGC 171648 ||| || |||||||| ||||||||||| Sbjct 567 TGCTCATAACTTCCCTCTAGACCTAGC 541 Score = 385 bits (426), Expect = 5e-102 Identities = 707/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| ||| || || ||||| || | || |||||||| Sbjct 35835 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 35894 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || |||||||| || | || | || ||||||||| ||| || || || Sbjct 35895 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 35954 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || |||||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 35955 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCTTA 36014 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || || |||| | || | | | ||| | | ||||| |||||||| Sbjct 36015 ACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGT 36074 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 ||||| |||||||||||| || || |||| ||||||||| || || |||| ||||| Sbjct 36075 CCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTT 36134 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || |||| || | || ||||| |||||||||||| | | || ||||| |||| | Sbjct 36135 GCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGC 36194 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 |||| | || ||||| || ||| |||||||||| || ||||| || || Sbjct 36195 TCTGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTT 36254 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | || || || |||||| |||||||| | |||||||||| || ||| |||||| Sbjct 36255 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 36314 Query 172275 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 172334 || || || || ||||| | || | || | || || || || ||| || | || Sbjct 36315 GTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 36374 Query 172335 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 172394 || |||||||||||||| || || ||| || | || | || | ||||||||||| ||| Sbjct 36375 CCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCAT 36434 Query 172395 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 172454 || || || ||| | || || || | |||||| || | | | | Sbjct 36435 GGCGCTACCGTAGAAAATACTTTATTTGAAGA---------------TG--GTGATGGTG 36477 Query 172455 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 172514 ||| | || ||| | || || | || || || | |||||||| ||| ||| | Sbjct 36478 CAAAC----ACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTC 36533 Query 172515 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 172574 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 36534 ACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 36593 Query 172575 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 172634 || ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 36594 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 36653 Query 172635 GGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 172694 || || || || ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 36654 GGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 36713 Query 172695 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 172754 || || || ||||| || |||||||| || || |||||| | || || ||||| | || Sbjct 36714 GATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 36773 Query 172755 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 172814 |||||| | || ||||| || ||||| ||| || | ||||| || || || | || Sbjct 36774 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 36833 Query 172815 CGAGGCAACGCACTATAA 172832 || || ||||| || ||| Sbjct 36834 CGTGGAAACGCTCTTTAA 36851 >seq2 Length=30838379 Score = 262 bits (290), Expect = 4e-65 Identities = 387/548 (71%), Gaps = 0/548 (0%) Strand=Plus/Minus Query 170678 GTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGT 170737 ||||| |||||| || ||| | ||| |||||||||||||||| || |||||||| | Sbjct 6214855 GTAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACT 6214796 Query 170738 CTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATC 170797 | | || || || || || ||| | || ||||| | |||||||||||| ||||| Sbjct 6214795 TTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGTTGCTCCTCCAGTAGATATT 6214736 Query 170798 GACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGT 170857 ||||| || | |||| ||| | | ||| | | ||||| ||||| || || |||||| Sbjct 6214735 GACGGTATTCGTGAACTTGTTTCTGAATCTCTACTTTATGGAAACAATATTATTTCTGGT 6214676 Query 170858 GCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCC 170917 || | |||| |||| || ||||| || || || || || || |||||||| || Sbjct 6214675 GCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCA 6214616 Query 170918 ACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTT 170977 | | || || ||||| ||||| || |||||||| || || || || | |||||| | Sbjct 6214615 TCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTA 6214556 Query 170978 ATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGA 171037 |||| | || ||||||||| | |||||||||| | | | | || ||| Sbjct 6214555 CTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTATGGGTATGCAT 6214496 Query 171038 CCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTG 171097 |||||||| ||| ||||| ||||| | ||| | ||||| | | || ||| | | Sbjct 6214495 CCTTGGATTGTTGTTGCATATTCAGCTCTTGTTGCAGCAGCGACTACTGTTTTCTTGATC 6214436 Query 171098 TATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTC 171157 || ||| | ||||| || || |||||||||||||| ||||| ||||| ||||| ||| Sbjct 6214435 TACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTC 6214376 Query 171158 AACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCA 171217 ||||||||| | || || | || || |||||||| || |||||||| ||||| ||| | Sbjct 6214375 AACTTCATGATTGTATTATAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTA 6214316 Query 171218 GGTGTAGC 171225 || |||| Sbjct 6214315 GGCATAGC 6214308 >seq3 Length=28715784 Score = 150 bits (166), Expect = 2e-31 Identities = 220/311 (71%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| ||| || || ||||| || | || |||||||| Sbjct 8270427 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 8270368 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || |||||||| || | || | || ||||||||| ||| || || || Sbjct 8270367 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 8270308 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || |||||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 8270307 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCTTA 8270248 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || || ||| | || | | | ||| | | ||||| |||||||| Sbjct 8270247 ACCGCCGCAGTTTCGACTCCTACTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGT 8270188 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 | ||| |||||||||||| || || |||| ||||||||| || || |||| ||||| Sbjct 8270187 CTTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTT 8270128 Query 172095 GCATTACATGG 172105 || || || || Sbjct 8270127 GCTTTCCACGG 8270117 >seq20 Length=1106287 Score = 109 bits (120), Expect = 6e-19 Identities = 137/186 (74%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 171467 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAAC 171526 ||||| || || | ||||| | || ||||| |||||| | || || ||||| |||||| Sbjct 251039 TGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAAC 250980 Query 171527 CAATCAGTTGTAGATG--CAAA--CGGAAAGATTGTACCAACATGGGGAGATGTTCTTAA 171582 ||||| || || ||| ||| || | | |||| |||| ||| || |||| Sbjct 250979 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACC----TGGGCTGATATTATTAA 250924 Query 171583 CAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGA 171642 | || |||||||| |||||||||||||||||| | ||||| || |||||||| ||||| Sbjct 250923 TCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 250864 Query 171643 CCTAGC 171648 |||||| Sbjct 250863 CCTAGC 250858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570234270224160