Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq7 161 1e-34 seq1 147 3e-30 >seq7 Length=32205869 Score = 161 bits (178), Expect = 1e-34 Identities = 410/617 (66%), Gaps = 10/617 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || |||||||||||||| |||||||| |||| || | ||||| || | Sbjct 30819062 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 30819121 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCA 33414 | || | ||| ||||||| || |||||||| ||||||||||| | || || | || Sbjct 30819122 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 30819180 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 33471 || ||||| || || || || |||||| || || | |||||| | || | | | Sbjct 30819181 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 30819240 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | ||| ||||| ||| ||||| ||| |||||| || || || | ||| || Sbjct 30819241 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 30819297 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 ||||| | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 30819298 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 30819357 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 |||||||| || || ||||| || ||||| || || || |||||||| | |||| Sbjct 30819358 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCC 30819417 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTC 33710 |||| | ||| || || || || | | |||| || | || || || || ||||| Sbjct 30819418 TCGGCGACCTGGACCTCCGT-CATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTC 30819476 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 |||||| || || || | || || | | || | || ||||| | ||||| Sbjct 30819477 GGAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGC 30819536 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 30819537 CTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTC 30819596 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATT 33890 || || || ||||| | ||| || | || || || ||||| || ||||| || Sbjct 30819597 GGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATC 30819656 Query 33891 TGGATTTGGTGCAAGGA 33907 |||||||| || |||| Sbjct 30819657 GGGATTTGGGGCTAGGA 30819673 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 11158331 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11158272 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 11158271 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 11158213 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 11158212 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 11158153 Query 63790 AAGTTTTAAAACCAAAATA 63808 ||||| || ||||| || Sbjct 11158152 GGGTTTTGAAGCCAAAGTA 11158134 >seq1 Length=28801852 Score = 147 bits (162), Expect = 3e-30 Identities = 388/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || || || |||| ||||| ||||| || | Sbjct 1183794 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 1183853 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || || || ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 1183854 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCG 1183913 Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 33471 | ||||| || ||||| || ||| ||||| || || |||||||| | || | | | | Sbjct 1183914 AGAAGAATATCCCTTCCAC-GCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 1183972 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | ||| ||||| ||| | |||||||||||||| || || || |||| |||||| Sbjct 1183973 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 1184029 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 | ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 1184030 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 1184089 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 1184090 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 1184149 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 |||| | || |||||| | || | | || | ||||| || ||||| || Sbjct 1184150 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 1184209 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771 ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 1184210 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 1184269 Query 33772 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 33831 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 1184270 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 1184329 Query 33832 GCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || || || ||||| | |||||| || || |||||||| || || Sbjct 1184330 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 1184376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622909480547040