Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4 120 3e-22 seq6 96.9 3e-15 seq4831 89.7 5e-13 seq8 89.7 5e-13 seq7 89.7 5e-13 >seq4 Length=19951838 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| || | ||||||||| | |||||| | || | ||| | Sbjct 7828006 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 7827947 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| |||||| ||||| |||||||| || || || || Sbjct 7827946 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 7827887 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || |||| | ||||||||||| || |||| | | | | |||||||||| Sbjct 7827886 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 7827827 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || || || || |||| |||||||| | || ||||| |||| Sbjct 7827826 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTAAGAGGTGGAA 7827778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||| || | |||||||| | || ||| | || | ||| | Sbjct 7833103 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTGGAAGCTCG- 7833045 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| || ||| || || |||||||| || || || || Sbjct 7833044 GACACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGGGATCCCACCAGACCAG 7832985 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT-GATAGAAACGT-CAGCGACTATA 26946 ||||| ||||| | | ||||||||||| || ||| || | || | || ||||| | Sbjct 7832984 CAAAGGCTCATATTTGCTGGCAAACAACTTGAGGATGGACGCACACTTGCA--GACTACA 7832927 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || || ||||| || | ||| ||||||| Sbjct 7832926 ACATCCAGAAGGAATCAACCCTTCATTTGGTCCT 7832893 >seq6 Length=21175815 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| ||||| || ||||||||||| || ||||| |||| | || |||||| | ||| Sbjct 13335049 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 13335108 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || |||| || || |||||||||||||| || || || | || ||||||| Sbjct 13335109 GATGGCAG-AACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCT 13335167 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || || ||||||| Sbjct 13335168 GAGGCTCAGGGGAGGAA 13335184 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || ||||| |||| || ||| ||||||| ||||| | || Sbjct 5316715 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 5316774 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||| ||||| | ||||| ||||| ||||| || || || || || || Sbjct 5316775 CTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGA 5316834 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || | ||||| | | ||| || ||||||||||| | | | | ||| || Sbjct 5316835 CCAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTA 5316894 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||||||||| ||| | ||||| || || || ||| | || |||| Sbjct 5316895 CAACATTCAAAAAGAATCCACTTTGCATCTTGTACTCAGGCTTCGTGGTGGAA 5316947 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| ||||| | || || || | |||||| ||||| | || Sbjct 5335433 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 5335492 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| ||||| | ||||| ||||| ||||| || || || || || || Sbjct 5335493 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 5335552 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | | ||| || ||||||||||| | | | | ||| || Sbjct 5335553 CAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 5335612 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||||||||| ||| | ||||| || || || ||| | || |||| Sbjct 5335613 AACATTCAAAAAGAATCCACTTTGCATCTTGTACTCAGGCTTCGTGGTGGAA 5335664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| ||||||| || ||||||| |||| | || | Sbjct 5327692 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCC 5327751 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| ||||| ||||| |||||||| || || |||||| Sbjct 5327752 GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 5327811 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 |||||| | || | | ||| |||||| | ||||| | | |||| || |||||||| Sbjct 5327812 CAAAGATTGATCTTTGCCGGGAAACAATTAGAAGACGGCCG-CACGTTGGCTGACTATAA 5327870 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || ||||| || ||| | || || ||||| Sbjct 5327871 CATCCAGAAAGAGTCAACTCTTCACCTTGTCCT 5327903 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| ||||| | || || ||||| |||||||| ||||| ||||| || || Sbjct 12932019 CGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCA 12931960 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || ||||| | || |||||| || ||||| |||| | | || ||| || || Sbjct 12931959 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAA 12931900 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||| || || ||| |||| || ||||| Sbjct 12931899 CATTCAAAAGGAGTCCACTCTCCACCTTGTCCT 12931867 >seq4831 Length=230 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| ||||| | || ||| | || | |||||| Sbjct 16 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCG 75 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 76 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 135 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || ||||| || | |||| | | |||||| ||| Sbjct 136 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC 195 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| || ||||| Sbjct 196 ATCCAAAAGGAGTCAACACTCCACCTCGTCCT 227 >seq8 Length=22711823 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| ||||| | || ||| | || | |||||| Sbjct 18948240 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCG 18948181 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 18948180 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 18948121 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || ||||| || | |||| | | |||||| ||| Sbjct 18948120 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC 18948061 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| || ||||| Sbjct 18948060 ATCCAAAAGGAGTCAACACTCCACCTCGTCCT 18948029 >seq7 Length=32205869 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| ||||| | || ||| | || | |||||| Sbjct 5585083 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCG 5585024 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 5585023 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 5584964 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || ||||| || | |||| | | |||||| ||| Sbjct 5584963 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC 5584904 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| || ||||| Sbjct 5584903 ATCCAAAAGGAGTCAACACTCCACCTCGTCCT 5584872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478633416991680