Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq6 93.3 4e-14 >seq4 Length=19951838 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || ||||| |||||||| || ||| | || ||| | | Sbjct 7828006 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 7827947 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || ||| || ||| || || ||||| |||| || || Sbjct 7827946 GACACTATTG-ACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCA 7827888 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||||| ||| ||||||||| | || |||| | ||| | ||||| ||||| Sbjct 7827887 GCAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAA 7827828 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| || ||||| || Sbjct 7827827 CATTCAGAAGGAGTCCAC 7827810 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCCA 115343 |||||||||||||| || || ||||| |||||||| || || | || | |||| | Sbjct 7827094 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 7827035 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | ||||| ||| | || || || || ||||| || ||| | || || | Sbjct 7827034 G--ACACTATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACC 7826977 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || | |||| ||| ||||| || | ||||||| | ||| | || ||||| | Sbjct 7826976 AGCAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACA 7826917 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||| || || || || | ||| ||||||||||| |||| ||||||| Sbjct 7826916 ACATTCAGAAGGAATCCACACTGCATTTGGTGTTGAGACTGCGTGGAGGAA 7826866 >seq6 Length=21175815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || |||||||| || |||||||| || || || | ||| ||| | Sbjct 5316946 AATGCAGATCTTCGTCAAAACCCTGACGGGAAAGACGATCACTCTGGAAGTCGAGAGCTC 5317005 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || || |||||| ||||||||||| |||| ||||| Sbjct 5317006 TGACACCATTG-ACAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATCCCACCTGATC 5317064 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| | || || | ||| || || || | || |||| | || | || ||||| | Sbjct 5317065 AGCAGCGCCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACGCTTGCGGATTACA 5317124 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||||| || ||||| ||| | ||| |||||||| Sbjct 5317125 ACATTCAGAAGGAGTCGACTCTTCATCTGGTGTTG 5317159 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || |||||||| || |||||||| || || || | ||| ||| | Sbjct 5335663 AATGCAGATCTTCGTCAAAACCCTGACGGGAAAGACGATCACTCTGGAAGTCGAGAGCTC 5335722 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || || |||||| ||||||||||| |||| ||||| Sbjct 5335723 TGACACCATTG-ACAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATCCCACCTGATC 5335781 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| | || || | ||| || || || | || |||| | || | || ||||| | Sbjct 5335782 AGCAGCGCCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACGCTTGCGGATTACA 5335841 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||||| || ||||| ||| | ||| |||||||| Sbjct 5335842 ACATTCAGAAGGAGTCGACTCTTCATCTGGTGTTG 5335876 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| | || |||||||| ||||| |||| ||| || |||||||| ||| Sbjct 13335049 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 13335108 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || ||| | || ||||||||||||||||| ||||| || | || |||| || Sbjct 13335109 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCTG 13335168 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 13335169 AGGCTCAGGGGAGGAA 13335184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425318889285280