Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq25 109 4e-19 seq6 105 5e-18 seq4 105 5e-18 >seq25 Length=987425 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || |||| || |||| ||||| || |||||||| || || ||||||||||| Sbjct 697607 CCCACCACGAAGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGC 697548 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || |||| |||| || | || ||||| || | || || ||||| |||||| || Sbjct 697547 CAAGGTTCGCCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGG 697488 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| || | | ||| || | | | | |||||| || |||| Sbjct 697487 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCAC 697428 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 |||| || ||||| || || || || ||||| || || |||||||| |||| Sbjct 697427 CTCCAACGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTGT 697375 >seq6 Length=21175815 Score = 105 bits (116), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| |||||||| ||||| | || | | ||||| | || Sbjct 12931876 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGC 12931935 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || |||| ||| |||||| ||| | ||||||||||| || || Sbjct 12931936 TTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTG 12931995 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | |||||| | |||| |||| ||| || || || |||| Sbjct 12931996 GC--CTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTAATCGTCTTCCCGG 12932053 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 ||| ||| ||||| || ||||||||| Sbjct 12932054 TCAACGTCTTGACGAAGATCTGCATT 12932079 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || || |||||||| || |||||||| |||||| Sbjct 5234141 CCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCC 5234082 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || ||| | ||||||| ||| |||||| || Sbjct 5234081 AAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGGA 5234022 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-C 16885 | ||||| ||||| || || || ||| || | | | | ||||| || |||| | Sbjct 5234021 ATTCCCTCCTTGTCTTGGATCTTGGC--CTTTACGTTGTCGATGGTGTC--CGAGCTCTC 5233966 Query 16886 GT-TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||| | || || ||||||||||||| ||||| || || |||||||| Sbjct 5233965 GACTTCGAGAGTAATAGTTTTTCCGGTCAAGGTTTTCACGAAGATCTGCAT 5233915 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || || |||||||| ||||||||||| |||||| Sbjct 5234369 CCTCCGCGGAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGCC 5234310 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || || | ||||||| ||| |||||| || Sbjct 5234309 AAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGGG 5234250 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | ||| || | | | | |||||| | ||| | Sbjct 5234249 ATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACT 5234190 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || ||||| || ||||| ||||| || || |||||||| Sbjct 5234189 TCGAGAGTAATAGTTTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 5234143 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || || |||||||| || || ||||| || ||| Sbjct 5234597 CCACCACGGAGCCTGAGGACGAGATGAAGGGTTGACTCCTTCTGGATATTGTAATCAGCC 5234538 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| ||| ||||| ||| | || |||| ||| |||||| || Sbjct 5234537 AAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 5234478 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | ||| || | | | ||||| | ||| Sbjct 5234477 ATTCCCTCCTTGTCTTGAATCTTCGCCTTAACGTTATCGATCGTGTCTGAGCTCTCAACC 5234418 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || || ||||| || ||||||||||| |||||||| Sbjct 5234417 TCGAGGGTTATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 5234371 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| || ||||| ||||||||||| ||||| || || || Sbjct 13335182 CCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTGCA 13335123 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || ||||||||||| || ||| |||| || | ||| || || ||| Sbjct 13335122 AGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCGGGAGGA 13335063 Query 16829 ACGCCCTCTTTGTC 16842 | ||| || ||||| Sbjct 13335062 ATGCCTTCCTTGTC 13335049 >seq4 Length=19951838 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| ||| | || |||| || || ||||||||||| || ||||| |||||||| Sbjct 7827780 CCACCTCTTAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCA 7827839 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | ||||||||| ||| ||||||||| || ||||| || Sbjct 7827840 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 7827899 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| || || | | | | ||||||| | ||| Sbjct 7827900 ATCCCTTCCTTGTCCTGAATCTTGGCT--TTGACATTGTCAATAGTGTCGGAGCTTTCCA 7827957 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| |||||||| || || || || ||||| |||||||| Sbjct 7827958 CCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 7828006 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | |||||| ||||||||||| || |||||||| || || Sbjct 7860936 CCTCCACGGAGTCGGAGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCA 7860995 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | |||||| || ||| | || | || ||| ||||| || Sbjct 7860996 AGAGTCCTTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 7861055 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || || |||||| | | | | ||||| ||| Sbjct 7861056 ATCCCCTCCTTATCCTGGATCTTAGC--CTTCACATTGTCAATTGTGTCCGAACTCTCAA 7861113 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||||| || || || || || |||||||||||||| Sbjct 7861114 CCTCCAATGTGATGGTTTTCCCAGTGAGTGTCTTCACAAAAATCTGCAT 7861162 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/205 (69%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAA-TTG 16791 || || |||||||||||||| || ||||| ||||| || | ||||||| || ||| Sbjct 3588231 TGGAGAGTGGACTCCTTTTGAATATTGTAATCGGCTTGAGTCCAGCCGTCCTCAAAATTG 3588172 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTG 16851 ||| || | || |||| ||| ||| | || | ||||| ||||| ||| | Sbjct 3588171 CCTGCGGGCGAAGATGAGCCTCTGCTGGCCTGGCGGAAGCCCCTCCTTGTCCTGAATCTT 3588112 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | |||||| | | | | ||||| | |||| || | ||||||||||||||||| Sbjct 3588111 CGTCTTCACGTTGTCGATCATGTCGGAGCTCTCCACCTCTAAAGTGATGGTTTTTCCGGT 3588052 Query 16912 CAGCGTTTTGACAAAAATCTGCATT 16936 | ||| ||||| || ||||||||| Sbjct 3588051 CGACGTCTTGACGAAGATCTGCATT 3588027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405064085123560