Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7 167 3e-36 seq1 141 1e-28 >seq7 Length=32205869 Score = 167 bits (184), Expect = 3e-36 Identities = 403/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || || |||||||||||||| |||||||| |||| || || ||||| || | Sbjct 30819062 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 30819121 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 | || | ||| ||||||| || |||||||| ||||||||||| | |||||| | || Sbjct 30819122 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 30819180 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 32828 || |||||||| || || || ||||| || || | |||||| | || | | | Sbjct 30819181 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 30819240 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| ||| ||||| ||| |||||| || || || | ||||| Sbjct 30819241 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 30819297 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || || | ||||||| ||| ||||| | ||||| | || || || | | || Sbjct 30819298 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 30819357 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 |||||||| || || ||||| || ||||| ||||| || ||||||||| | |||| Sbjct 30819358 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCC 30819417 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 |||| | ||| || || || || | | | || | || || || || ||||| Sbjct 30819418 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 30819477 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 |||||| || || || | || || | | || | || ||||| | ||||| Sbjct 30819478 GAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 30819537 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 30819538 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCG 30819597 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 33248 || || || ||||| | ||| || | | || ||||| || || || ||||| || Sbjct 30819598 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCG 30819657 Query 33249 GGATTT 33254 |||||| Sbjct 30819658 GGATTT 30819663 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 11158331 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 11158272 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 11158271 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 11158213 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 11158212 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 11158153 Query 63645 AAGTTTTAAAACCAAAATA 63663 ||||| || ||||| || Sbjct 11158152 GGGTTTTGAAGCCAAAGTA 11158134 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 11158647 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 11158588 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| || || || || ||||| |||||| | |||||||| || || ||| Sbjct 11158587 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 11158528 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 11158527 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 11158468 Query 63407 CCCTCTATACTATCATCCATCAT 63429 || || ||||||||||| |||| Sbjct 11158467 CCTTCAATACTATCATCTTTCAT 11158445 >seq1 Length=28801852 Score = 141 bits (156), Expect = 1e-28 Identities = 387/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 1183794 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 1183853 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || || || ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 1183854 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCC 1183912 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 32828 || ||||| || ||||| || ||||| || || |||||||| | || | | | | Sbjct 1183913 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 1183972 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| ||| | |||||||||||||| || || || |||| || || Sbjct 1183973 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 1184029 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 | || ||| | | | ||||| | | ||| | || || || | | || Sbjct 1184030 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 1184089 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 |||||||| || || ||||| || ||||| ||||| || ||||||||| | ||| Sbjct 1184090 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 1184149 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 |||| | || |||||| | || | | || | ||||| || ||||| || Sbjct 1184150 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 1184209 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 1184210 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 1184269 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 1184270 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 1184329 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || || || ||||| | |||||| || | || || |||||||| || Sbjct 1184330 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 1184376 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 4158753 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 4158694 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || || ||||| ||||| | |||||||| || || ||| Sbjct 4158693 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 4158634 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 4158633 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 4158574 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 4158573 CCTTCAATACTATCATCTTTCATG 4158550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633593633582400