Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7 228 9e-55 seq1 194 2e-44 seq2 93.3 5e-14 seq3 91.5 2e-13 seq8 89.7 6e-13 seq5 89.7 6e-13 seq6 86.0 7e-12 >seq7 Length=32205869 Score = 228 bits (252), Expect = 9e-55 Identities = 598/901 (66%), Gaps = 21/901 (2%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||||| |||||||||||| | |||||||| ||||| ||||| |||| Sbjct 30818766 CATAACAGAAGCCTTTTGATATTCCCCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTG 30818825 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCG-A 92906 | || ||| | || | | | |||||| || | ||| | ||| | Sbjct 30818826 AAGCGAGATCAGCTCCATCCAATCAAAAGGATTC---GCCACACCGTACAGCTTCCCGTA 30818882 Query 92907 TCAACTCGTAC--AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACA 92964 | | || || || |||||||| || ||||| |||||||||||| |||||| || | Sbjct 30818883 CCCAAGCGCACCCAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCC 30818942 Query 92965 ATTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAA 93023 |||||| || | | ||| || || || || ||| || || ||| |||| || | | Sbjct 30818943 ATTCATCCCCACCA-ACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCA 30819001 Query 93024 CGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TG 93082 | || || |||| | | | ||||| || | | | || || | |||| || Sbjct 30819002 CCGCCTCCTTCACTAACGCCTTCACTCT-CTCCTCGCTTAGCTTCGTCCTCAATAAACTG 30819060 Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| | |||||| || ||| || | ||| || ||||| || |||||||| || | Sbjct 30819061 TACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAG 30819120 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 |||||||| || || | | || || || |||||||||||||| | |||||| || Sbjct 30819121 AATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCT 30819180 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 || || || || || |||||| ||||| || | | | || || ||| | | || Sbjct 30819181 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 30819240 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 | | |||||| ||||| ||||| |||||| || | || || | || ||| Sbjct 30819241 ---CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 30819297 Query 93323 ATAGCGTTAAATAG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 || |||| ||| || || | | ||||| || ||| ||||| || || | | | Sbjct 30819298 ATGGCGTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGC 30819354 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 || || |||||||| || |||| ||||| || || |||||||| |||||||| | | Sbjct 30819355 AGCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGA 30819414 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 || || | || ||| || || || || | |||| || || ||| || || Sbjct 30819415 GCCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCG 30819474 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 ||||| ||||| || || || | | ||| | | || || ||||| ||| | | || Sbjct 30819475 TCGGAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 30819534 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 ||||| | | ||||||| |||||||| ||||| || ||||||||||||| ||| Sbjct 30819535 GCCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCT 30819594 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGA 93679 || ||||| |||||||| ||||| || | | | || ||||| || || ||| ||| ||| Sbjct 30819595 TCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGA 30819654 Query 93680 T 93680 | Sbjct 30819655 T 30819655 >seq1 Length=28801852 Score = 194 bits (214), Expect = 2e-44 Identities = 600/913 (66%), Gaps = 19/913 (2%) Strand=Plus/Plus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 |||||||||||||| ||| | || ||||||||||| ||||| |||| || || ||| | Sbjct 1183511 TTTTGGTATTCCCCGACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAAC 1183570 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 | || | | | |||||| | || || ||| | | | | || ||| Sbjct 1183571 TCCATCCAATCAAACGGATTCGTCACGCCGTACACCTTCCCGCACCCGAGCGCGCCCAAC 1183630 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAG 92979 || ||||| || ||||| |||||||||||| |||||| | | ||||| || | || Sbjct 1183631 AACCTATCTGCCACAAACTCTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAAT 1183690 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 || || || || |||||| || ||| || |||| || | || || || |||| || Sbjct 1183691 GCGCAC-GGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTAT 1183749 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT--TGTACATTAAGCACGCA 93097 | || || | || | | | ||| || | || | |||||| |||||||| Sbjct 1183750 CCCCATCACGCG-CTCCTCGCTTAATTT-GTTCCTCAGCAAGCTGTACAACAAGCACGCG 1183807 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || ||| || | ||||| ||||| || || | ||| || ||| |||| || || Sbjct 1183808 AAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGC 1183867 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACC 93216 | | || || || || | ||||||||| | ||| ||||| || || || ||||| || Sbjct 1183868 ATTAACCCGCGCTTTTTCAACCAAAATATCGC-GCAGAAACTGCCCGAGAAGAATATCCC 1183926 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||||||| ||||| || | | | || || || | | || | | |||||| Sbjct 1183927 TTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG---CCGTCGATCCA 1183983 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT-A 93335 |||| ||||||||||| ||||| || || || | ||||| | ||| |||| | Sbjct 1183984 ATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATAA 1184043 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | ||| ||||| || | | |||||| || || | | || || |||||||| | Sbjct 1184044 GCGGCTCT-TTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGG 1184102 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | |||| ||||| || || |||||||| |||||||| | || || | || || | Sbjct 1184103 AGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGA 1184162 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 |||||| || || | |||| ||||| ||| || ||||| || || || || | Sbjct 1184163 CTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGA 1184222 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGA 93573 | || | | ||| | || || |||||||| || | | || ||||| | |||| Sbjct 1184223 AGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGATTCCCACTGGCGGA 1184282 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | || | || || ||||| || || | |||||||| || ||||| ||||| ||||| Sbjct 1184283 T--GTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTA 1184340 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 ||| ||||| || || | || || |||||||| ||| || || | ||||| | Sbjct 1184341 CATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTTCGGGGT 1184400 Query 93694 TAGTAACGGCTCT 93706 ||| | ||||||| Sbjct 1184401 TAGCAGCGGCTCT 1184413 >seq2 Length=30838379 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 12449104 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 12449047 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| |||||||||| || Sbjct 12449046 CGTGGGTTCAAATCCCACTTCTGACAAATTTTT 12449014 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/102 (81%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | ||||| ||| | || ||||||| Sbjct 4555366 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCCGTAAGG-GCGTGGG 4555423 Query 126328 TTCGAACCCCACACCTGACAAATTAT---TATTGGAATTTTT 126366 ||| || |||||| ||| || | ||| |||| ||||||| Sbjct 4555424 TTCAAATCCCACAGCTGTCAGACTATCAATATTATAATTTTT 4555465 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/95 (82%), Gaps = 8/95 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 8680103 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 8680160 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 |||||||||| || ||||| ||||| ||||||| Sbjct 8680161 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTA 8680193 >seq3 Length=28715784 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/113 (79%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 28204072 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 28204015 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGCGGTTGGGAC 126380 ||| || |||||| ||| |||| | |||| | ||||| |||| |||| || Sbjct 28204014 TTCAAATCCCACAGCTGTCAAAATTTTAT--AATTTTTTTTTGCTTTTGGAAC 28203964 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 15972107 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 15972164 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 15972165 GCGTGGGTTCAAATCCCACTTCTGACA 15972191 >seq8 Length=22711823 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/103 (81%), Gaps = 7/103 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 20523331 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 20523274 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363 |||||||||| || ||||| ||||| |||| ||||| || || Sbjct 20523273 GCGTGGGTTCAAATCCCACTTCTGAC-AATTGTTATTTGATTT 20523232 >seq5 Length=36147563 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/97 (81%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 |||| ||| |||||||||||||||||||||||||||||| | |||||| || | || Sbjct 3200222 ACAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGC 3200279 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA--TTATTATT 126357 |||||||| || |||||| ||| |||| ||||| || Sbjct 3200280 GTGGGTTCAAATCCCACAGCTGTCAAAACTTATTTTT 3200316 >seq6 Length=21175815 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 12411960 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 12411901 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| || ||||| |||||||||| Sbjct 12411900 GTGGGTTCAAATCCCACTTCTGACAAATT 12411872 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 15580593 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 15580650 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| |||||| Sbjct 15580651 TTCAAATCCCACAGCTGTCAAATT 15580674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556827082078560