Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 9e-15 >seq4 Length=19951838 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || ||||| ||||||||| | ||| || | Sbjct 7827550 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 7827491 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| || ||| || || || || | || |||| Sbjct 7827490 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 7827431 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || || || |||||| || || | ||||| |||||| Sbjct 7827430 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTACAAT 7827371 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || |||||||| |||| | || | || ||||| Sbjct 7827370 ATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTTCGTGGAGG 7827324 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || ||||||||| | || |||||| | Sbjct 7833103 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTGGAAGCT-CG 7833045 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || |||||| ||||| || || | || | |||| Sbjct 7833044 GACACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGGGATCCCACCAGACCAG 7832985 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || || || ||||||||||||||||| || ||| | || | || || ||||| Sbjct 7832984 CAAAGGCTCATATTTGCTGGCAAACAACTTGAGGATGGACGCACACTTGCAGACTACAAC 7832925 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||||||||| || |||||| |||| Sbjct 7832924 ATCCAGAAGGAATCAACCCTTCATTTGGT 7832896 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| |||||| | ||||| | || || ||||| || ||| ||||| || | Sbjct 7827779 AATGCAGATATTTGTGAAAACCCTGACTGGTAAAACTATCACCTTGGAAGTTGAGAGTTC 7827720 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| || ||| || || ||||| | ||| | || Sbjct 7827719 TGATACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCA 7827660 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||| || |||||||| || || ||||||||| || | || || ||||| Sbjct 7827659 GCAGAGACTGATTTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTTGCTGACTACAA 7827600 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||||||||| ||||| |||| Sbjct 7827599 CATTCAGAAGGAATCTACCCTTCACTTGGT 7827570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358103657654776