Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq8 87.8 2e-12 >seq8 Length=22711823 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 |||| ||||||||||| ||| | || ||||||| ||| ||||||||||| || || Sbjct 5299315 ACCACAAACATGAGCAATCATGCATGTCAAGAGGGCATATGAAGCAATGTTAAACGGCAC 5299374 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 |||| ||||| || | || | |||||||| ||||| || | ||| || | ||| || Sbjct 5299375 ACCCAGGCCCATATCAGCAGAGCGCTGATACATTTGACATGATAACTCCCCATTAGCCAC 5299434 Query 20359 ATAAAATTGACATAACAA 20376 ||| || || || ||||| Sbjct 5299435 ATAGAACTGCCAAAACAA 5299452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 20239 ACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAAC 20298 |||| ||||||||||| ||| | || ||||||| ||| ||||||||||| || || Sbjct 5317633 ACCACAAACATGAGCAATCATGCATGTCAAGAGGGCATATGAAGCAATGTTAAACGGCAC 5317692 Query 20299 TCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTAC 20358 |||| ||||| || | || | |||||||| ||||| || | ||| || | ||| || Sbjct 5317693 ACCCAGGCCCATATCAGCAGAGCGCTGATACATTTGACATGATAACTCCCCATTAGCCAC 5317752 Query 20359 ATAAAATTGACATAACAA 20376 ||| || || || ||||| Sbjct 5317753 ATAGAACTGCCAAAACAA 5317770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441346074876960