Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7 113 5e-20 seq2 89.7 6e-13 seq1 89.7 6e-13 >seq7 Length=32205869 Score = 113 bits (124), Expect = 5e-20 Identities = 370/568 (65%), Gaps = 13/568 (2%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||||||||| || || ||||| | || || ||||| | ||| ||||| | || Sbjct 30819084 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 30819143 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| || | ||| || ||||| ||||| || |||||||| || |||||||| || Sbjct 30819144 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 30819203 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || ||||| | | | ||| || || | ||| ||| | ||| || | ||| Sbjct 30819204 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGA---GCCGTCGATCCAATTTAACGC 30819260 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 |||| || || || ||| || || || |||| ||| || | |||||| ||||| Sbjct 30819261 CCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTCTT 30819320 Query 126298 TTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 126356 ||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 30819321 TTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA--T 30819377 Query 126357 TTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 126414 ||| ||||| || | ||||||| | ||| || ||| | ||| ||||| | Sbjct 30819378 GTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGGACCTC--C 30819435 Query 126415 GGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 126472 | || || | || ||||| | || || || ||||| | || || || || Sbjct 30819436 GTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGGCG 30819495 Query 126473 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCC 126532 || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 30819496 AGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGATCT 30819555 Query 126533 TTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCC 126592 | ||| ||||| || ||||| ||||||||| | || || ||||| || | |||| Sbjct 30819556 TGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCC 30819615 Query 126593 CAAAGGTGGGGATACTTCAGGGGGAACA 126620 |||| || || |||| | ||||||| Sbjct 30819616 CAAATTTGTGGGTACTGAATCGGGAACA 30819643 >seq2 Length=30838379 Score = 89.7 bits (98), Expect = 6e-13 Identities = 266/403 (66%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 10896 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 11989752 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 11989693 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 10954 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 11989692 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 11989635 Query 10955 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCA 11014 || | || ||||| ||||||||||| | || || || || || ||| || ||| Sbjct 11989634 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 11989575 Query 11015 A-CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 ||| ||| | |||||||||||| ||||||||||| |||||||| || ||||| | Sbjct 11989574 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 11989516 Query 11074 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 11989515 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 11989457 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCAC 11192 | |||||||| || || || || ||||||| |||| ||| || | || ||| Sbjct 11989456 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTTTGGAATACGAGCTCCAA 11989397 Query 11193 TTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTC 11235 | | | |||||| | |||||||| ||||| | ||| Sbjct 11989396 CAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTTC 11989354 >seq1 Length=28801852 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| || || || || ||||| || || ||||||||| || || ||||| | || Sbjct 1183816 GTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCC 1183875 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| |||||||| || ||||| || || ||||||||||| || || ||||| || Sbjct 1183876 GCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAGAATATCCCTTCCACGCA 1183935 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAA 126204 || ||||| | || | ||| || || Sbjct 1183936 GGCAAACGCTATCAGTCTCTCCGCGAA 1183962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597317430239520