Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq4 104 2e-17 seq3240 95.1 9e-15 >seq6 Length=21175815 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||||||||| || || || || ||||| ||||| ||| | || | || || Sbjct 5235036 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTC 5234977 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||||||||| | ||||||||||| || || |||||||||||||||||| Sbjct 5234976 AAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTGTCTTG 5234917 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| | || || || || | || || || || ||||| ||||| Sbjct 5234916 GATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATTGTTTT 5234857 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| || ||||| Sbjct 5234856 CCCAGTAAGGGTCTTAACAAATATCTGCAT 5234827 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | || | ||||| | |||||| || || || || || ||||||||||| Sbjct 4449567 TGCCACCCCTCAGACGCAAAACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG 4449626 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | || | || || | || ||||||||| | ||||||||||| ||||| | Sbjct 4449627 CGAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCG 4449686 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| || ||| || || | || || || ||| | || | Sbjct 4449687 GAATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCGA 4449746 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||| || || || || || ||||| || || || ||||| Sbjct 4449747 CTTCGAGGGTAATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 4449795 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | | || | ||| ||||| || || || || ||||||||||| Sbjct 4449341 CCACCTCGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 4449400 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||| || | || || |||||| | || | | ||| || || ||| Sbjct 4449401 AGAGTACGCCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGG 4449460 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| ||| ||| ||| | || || ||||| | | ||||| Sbjct 4449461 ATCCCTTCCTTGTCCTGAATCTTGGCTTTGACATTGTCAATGGTATCAGAACTCTCTACC 4449520 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | |||||| || || || |||| || || |||||||| ||||| Sbjct 4449521 TCCAGGGTAATCGTCTTCCCGGTCAATGTCTTAACAAAAATCTGCAT 4449567 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || | ||| | ||| || |||||||| |||||||||||| Sbjct 5265403 TGCCACCACGGAGCCTGAGGACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGG 5265344 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | ||||||| | ||| || |||||| | |||| | ||| |||||| | Sbjct 5265343 CCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCGGGAG 5265284 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || || | || || || ||| | || | Sbjct 5265283 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGA 5265224 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||| || || || ||||| ||||| || || || ||||| Sbjct 5265223 CCTCGAGGGTAATCGTCTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 5265175 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || ||||| ||||| ||||| || | | |||| |||| || Sbjct 5328123 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 5328064 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || |||||| | || | | ||| || || |||||| ||||||||||| ||| || Sbjct 5328063 CTTCCCAGCGAAAATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 5328004 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || ||| | || || ||||| | | || || || | ||||| || || || | Sbjct 5328003 TGCCTTG-ACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAG 5327945 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 ||| ||| || |||||||||||||| Sbjct 5327944 TCAAAGTCTTGACAAAAATTTGCAT 5327920 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || ||||| || ||||||||| | | | ||||||| | || Sbjct 4450781 ATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGCTG 4450840 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | |||| |||||| ||||| || |||||||||||||| || || Sbjct 4450841 TTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATCTT 4450900 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || || ||| | || || || | |||||||| || || || Sbjct 4450901 GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCGGT 4450960 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || ||||| || || || ||||| ||| ||| Sbjct 4450961 TAGGGTTTTCACGAAGATCTGCATCTTTTAAA 4450992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || | ||| | ||| || |||||||| |||||||||||| Sbjct 5327692 TGCCACCACGGAGCCTGAGGACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGG 5327633 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | ||||||| ||||| || || ||| | |||| | ||| |||||| | Sbjct 5327632 CCAAGGTGCGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAG 5327573 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || || | || || || ||| | || | Sbjct 5327572 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGA 5327513 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||| || || || || || ||||| || || || ||||| Sbjct 5327512 CCTCGAGGGTAATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 5327464 >seq4 Length=19951838 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||| ||| || || ||||| || || || || || || ||||||||||| Sbjct 7826868 CCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTGCA 7826927 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | ||| | ||||| | || ||||| || | ||||| | ||| ||||| |||| Sbjct 7826928 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGA 7826987 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || || ||| || ||| | || ||||| || | | ||||| Sbjct 7826988 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATAGTGTCCGAACTCTCTACC 7827047 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || ||||| || || ||||| || |||||||||||||| Sbjct 7827048 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 7827094 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || || ||||| ||| ||| | || | ||||| Sbjct 7827342 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 7827401 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | || | | ||| ||||| || || ||||||||||| | Sbjct 7827402 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 7827461 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || |||||||| | | || || |||||||||||||| || Sbjct 7827462 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 7827521 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || ||||| ||||||||| Sbjct 7827522 CCAGTAAGAGTCTTAACAAAGATTTGCATA 7827551 Score = 98.7 bits (108), Expect = 7e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || || || |||||||| || || | | | || || Sbjct 7832896 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 7832955 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||||||||| |||| | | || ||||| ||| || |||||||| || | Sbjct 7832956 AGTTGTTTGCCAGCAAATATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 7833015 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| ||| | || || || || | | ||| || || | ||||||||| || Sbjct 7833016 ATTTTGGCTTTGACATTGTCAATGGTGTC-CGAGCTTCCACCTCAAGGGTAATGGTCTTT 7833074 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || |||||||| |||||||| Sbjct 7833075 CCAGTGAGGGTCTTTACAAAGATTTGCAT 7833103 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || || || ||||| |||||| ||| | | | | || || Sbjct 7833122 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTC 7833181 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | || | | ||| || || |||||| ||||||||||| Sbjct 7833182 AAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTG 7833241 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || ||| ||| | || || |||||| |||| || || | ||| |||||||| Sbjct 7833242 GATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTT 7833301 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| |||||||| Sbjct 7833302 TCCAGTGAGAGTCTTCACAAAGATTTGCAT 7833331 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || || || |||||||| || || | | | |||||| Sbjct 7827570 ACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCTTCT 7827629 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | |||| | ||| || || || ||||| |||||||| | Sbjct 7827630 AGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGA 7827689 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || ||||| | | || || || ||||| || |||||| Sbjct 7827690 ATCTTAGCCTTGACATTGTCGATTGTATCAGAACTCTCAACTTCCAAGGTGATAGTTTTA 7827749 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| ||||| || ||||| Sbjct 7827750 CCAGTCAGGGTTTTCACAAATATCTGCAT 7827778 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || || || |||||||| || || | | | || ||| Sbjct 7861638 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 7861697 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| ||||| | || | | || ||||| ||| || |||||||| || | Sbjct 7861698 AGTTGTTTACCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 7861757 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| ||| | || || || ||| |||| || || | ||| || || || Sbjct 7861758 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCTTT 7861817 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || |||||||| || |||||| Sbjct 7861818 CCAGTGAGGGTCTTTACAAAGATCTGCATA 7861847 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || ||||| || ||| || | | | || || | |||| Sbjct 7827804 TGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCAAGGGTGCGGCCATCCTCAAGTTGT 7827863 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | || | | || ||||| ||| || ||||||||||| ||| ||| Sbjct 7827864 TTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTG 7827923 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || ||||| ||| |||| || || | ||| || ||||| || || Sbjct 7827924 GCTTTGACATTGTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTTTTTCCAGTG 7827983 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||| || |||||| Sbjct 7827984 AGGGTCTTTACAAAGATCTGCATA 7828007 >seq3240 Length=620 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || || || ||||| |||||| ||| | | | | || || Sbjct 502 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCCATCCTC 443 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | || | | ||| || || |||||| ||||||||||| Sbjct 442 AAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTG 383 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || ||| ||| | || || |||||| |||| || || | ||| |||||||| Sbjct 382 GATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCAACCTCAAGGGTTATGGTTTT 323 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| |||||||| Sbjct 322 TCCAGTGAGAGTCTTCACAAAGATTTGCAT 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357370900916540