Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7 111 2e-19 seq2 84.2 3e-11 seq1 82.4 9e-11 >seq7 Length=32205869 Score = 111 bits (122), Expect = 2e-19 Identities = 373/570 (65%), Gaps = 17/570 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||||||||| || || ||||| | || || ||||| | || ||||| | || Sbjct 30819084 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 30819143 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 30819144 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 30819203 Query 127651 CGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 127709 || ||||| | || | ||| || |||| | | | || | ||| || | || Sbjct 30819204 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAATTTAACG 30819259 Query 127710 CCCACTGTGCCTTT-TTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 127768 ||||| ||| |||| || ||| || || || |||| ||| || | |||||| ||| Sbjct 30819260 CCCAC-GTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 30819318 Query 127769 TTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGAC 127827 ||||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 30819319 TTTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA- 30819376 Query 127828 CATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 127885 ||| ||||| || | ||||||| | ||| || ||| | ||| ||||| Sbjct 30819377 -TGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGGACCTC- 30819434 Query 127886 TCGGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 127943 || || || | || ||||| | || || || ||||| | || || || | Sbjct 30819435 -CGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGG 30819493 Query 127944 CCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGAT 128003 | || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 30819494 CGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGAT 30819553 Query 128004 CCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTT 128063 | | || ||||| || ||||| ||||||||| | || || ||||| || | || Sbjct 30819554 CTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACATTT 30819613 Query 128064 CCCAGAGGTGGGGATACTTCAGGGGGAACA 128093 |||| | || || |||| | ||||||| Sbjct 30819614 CCCAAATTTGTGGGTACTGAATCGGGAACA 30819643 >seq2 Length=30838379 Score = 84.2 bits (92), Expect = 3e-11 Identities = 227/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || || || || |||| ||| || || | || || |||||||| || ||||| Sbjct 11989752 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 11989693 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 12869 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 11989692 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 11989635 Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCA 12929 || | || ||||| |||||||| || | || || || || || ||| || ||| Sbjct 11989634 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 11989575 Query 12930 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 ||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 11989574 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 11989516 Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 11989515 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 11989457 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 | |||||||| || ||||| || ||||||| |||| Sbjct 11989456 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 11989417 >seq1 Length=28801852 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 115961 |||||||||| || ||||||||||||||||||||||| |||||| | |||| || || Sbjct 4160914 TAGATGTTGGAAGTATATGGCTCAAAGCACTCATTGTT-TCCAAGAATCTGGCTGGTTGA 4160856 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAG 115988 ||| || ||||| ||||||| ||||| Sbjct 4160855 GGCAGTTGGCATTGGTGCCACAAGAAG 4160829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613470052139040