Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 seq7 132 8e-26 >seq1 Length=28801852 Score = 141 bits (156), Expect = 1e-28 Identities = 542/843 (64%), Gaps = 31/843 (4%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || || || ||||| || | || || || | ||||| | | || || | Sbjct 1183530 TCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAACTCCATCCAATCAAACGGAT 1183589 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||||| || |||| | ||||| || ||| |||||| ||||||||||| | Sbjct 1183590 TCGTCACGCCGTACACCTTCCCGCACCCGAGCGCGCCCAACAACCTATCTGCCACAAACT 1183649 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 | ||||| || |||| | | | ||| ||||||| || | |||| ||||| || Sbjct 1183650 CTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAATGCGCACGGC-AGCGCGTCG 1183708 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| |||||| |||| ||||| ||||| || |||| ||| | || || || | Sbjct 1183709 CACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTATCCCCATCACGCGCTCCTC- 1183767 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAA--------ACAGGAGGCACGCAAAGTCGCAGT 159938 |||| ||| || |||| | ||| | |||||| || ||||||| Sbjct 1183768 ----GCTT------AATTTGTTCCTCAGCAAGCTGTACAACAAGCACGCGAAATCGCAGT 1183817 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 | ||||| || || || ||||| | |||||| || | | | ||||||||||| | ||| | Sbjct 1183818 GGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCCGC 1183877 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCC 160057 || ||| | |||||| || | |||| || | | | | || || ||||| |||||| Sbjct 1183878 GCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCCGAGAAGAATATCCCTTCCACGCAG 1183936 Query 160058 GCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCC 160117 |||||||| | || ||||| | | | | | | | | | | |||| || |||| Sbjct 1183937 GCAAACGCTATCAGTCTCTCCGCGA---ATGTCTCCGAGCCGTCGATCCAATTTAGGGCC 1183993 Query 160118 CATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGC 160177 || || ||||| || || | |||||||| || | |||| ||| || | | || Sbjct 1183994 CAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATAAGCGGCTCTTT 1184053 Query 160178 TCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTT 160237 || | | || || || | | || |||||||||||| | ||| | || Sbjct 1184054 TCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGGAGTGGATGTTC 1184113 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGT 160296 |||||||| || || ||| |||||| ||||| | || || || || || | | Sbjct 1184114 TCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCT-CGGAGACTTGGACTTCTTTCAT 1184172 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||||| | || || | || | || || | ||| || ||||| || | ||| Sbjct 1184173 GAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGAAGGCGAGCAC 1184232 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 ||| | |||||| ||| ||||||| | | || |||||| || | ||| || Sbjct 1184233 GTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAG---GGATTCCCACTGGCGGATGTCCTG 1184289 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCA 160476 | || || ||||| ||||| ||||| | ||| | || | |||||||| |||| Sbjct 1184290 CGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACATTTCCCA 1184349 Query 160477 GAT 160479 ||| Sbjct 1184350 GAT 1184352 >seq7 Length=32205869 Score = 132 bits (146), Expect = 8e-26 Identities = 418/640 (65%), Gaps = 12/640 (2%) Strand=Plus/Plus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 ||| ||| || || || ||||| || ||||| || |||| || | || ||||||| Sbjct 30818894 CCAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCA 30818953 Query 159804 GCAGC-CTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTC 159862 || | | |||| ||||| || ||| |||||| |||| ||||| ||||| || || Sbjct 30818954 CCAACGCGCACGGC-AGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTC 30819012 Query 159863 ACAATCTGCGAGACACGTTCGTACCCCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAG 159921 || | | | || | || | | |||| | || ||| | ||| || Sbjct 30819013 ACTAACGCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAG 30819068 Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 |||||| || |||||||| || ||||| || || ||||| |||||||| || | | | Sbjct 30819069 GCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAA 30819128 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAA 160040 |||||||| | ||| ||| |||||||||||| || | ||||||| | || | || | Sbjct 30819129 TCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCTGAGAAGA 30819187 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCAT 160100 | |||||||||||| |||||||| | | ||||| | ||| | | | | | | Sbjct 30819188 AAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAA---GTCTCCGAGCCGT 30819244 Query 160101 GGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGT 160160 | |||| || ||||| || |||||||||| ||| || | ||||| ||||| Sbjct 30819245 CGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGT 30819304 Query 160161 TAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220 ||| | | || || || | || ||||| ||| | | ||| |||||||| Sbjct 30819305 GAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACA 30819364 Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280 |||| | ||| | || |||||||| || || ||| |||||| ||||| Sbjct 30819365 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGA 30819424 Query 160281 ACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCG 160340 ||| |||||| |||||||| | || || | || | ||||||| ||| | Sbjct 30819425 CCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTG 30819484 Query 160341 CAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTC 160380 | ||||| || | |||||| | || ||| || ||||||| Sbjct 30819485 CGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTC 30819524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795107053352640