Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20sinensis_20[refseq_20GCF_5F000317415.1_202012-12-12] 4,844 sequences; 327,829,540 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq3 87.8 2e-12 seq7 82.4 9e-11 >seq2 Length=30838379 Score = 140 bits (154), Expect = 4e-28 Identities = 314/463 (68%), Gaps = 14/463 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || || | | || ||||| || || |||| ||||| || | ||||| Sbjct 11989770 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 11989711 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| ||||||||||||||||||| || || || | |||||||||| || | | Sbjct 11989710 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 11989653 Query 16037 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 11989652 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 11989593 Query 16095 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| || | | ||| ||| ||||| || || | || || |||||||| Sbjct 11989592 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAAC 11989534 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 11989533 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAG 11989475 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 |||| || ||| ||||||||||| || || ||||| ||| |||| || |||| Sbjct 11989474 CAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCT 11989415 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 |||||| || ||| | |||||||||| | |||||| || ||||| | Sbjct 11989414 TTGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC---CA 11989358 Query 16333 CTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 ||||| || || | ||| || | |||| || ||||||| Sbjct 11989357 CTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 11989315 >seq3 Length=28715784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/217 (71%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||||||||| |||||||| || || | |||||| || || Sbjct 28140041 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 28139984 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 28139983 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 28139924 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || ||| |||| | || ||||| | ||||| ||| || | ||||| || Sbjct 28139923 CACGGT--GCCTTCGATTTGGCCTTCTCAAACAAATCCC--TCACTCTGGATGCGCCAAC 28139868 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 ||||||||||| ||| ||||| | || ||| | |||| Sbjct 28139867 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACAT 28139831 >seq7 Length=32205869 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/223 (69%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 111537 GACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCC-AAAG----ACTGG 111591 |||| || ||| ||||| |||| ||||| |||| ||||||| |||| | || Sbjct 11158125 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 11158184 Query 111592 ATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATG 111651 | ||| || | |||| || ||| | ||||| ||| |||| | || || || || Sbjct 11158185 AAGGT----TG-TAGAAAGACCTCAGCATATGTTGATGAGGGTTTCTATTGGAATTCACA 11158239 Query 111652 GGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCC 111711 ||| ||||||||||||| | | | |||||| | | |||||||| | ||||| || Sbjct 11158240 AGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCC 11158299 Query 111712 ACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754 | ||| | || || || || || ||||| || ||||| ||||| Sbjct 11158300 ATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 11158342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620704814047680